Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A11
         (1253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    34   0.036
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    29   1.3  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    28   2.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   5.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   5.4  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    27   7.2  

>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
 Frame = +3

Query: 492 LVWPSSWVVFTVFWTLLHYDRSLIFPAYLDKIITRLSNHVIHTMIVPVVVWEVMFWPRKP 671
           +V P   +V  ++W+++ YDRSL+ P   D+ +    N  I   ++P V   + +    P
Sbjct: 25  IVCPLETIVSILYWSIVSYDRSLLIPK--DRPVPLPLNFDISVHLMPTVYTLIDYLFFSP 82

Query: 672 KSHYRNIAQLAIHM---LAYIFVLHFTYHEHGVWLYP---IFKAVQGTIHFYLLHFYVAA 833
                    L +++   ++Y+  +   Y  +  + YP   I   ++ TI FY +   ++ 
Sbjct: 83  PFSLSIGPSLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTI-FYTVASIISF 141

Query: 834 MCLMFYKL 857
            C +  K+
Sbjct: 142 SCYIVLKM 149


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 424 FSSTRRSQSVPSAAYPIFRPAVQVVKYRYSIFLKVPVPKFSMDSSL 287
           FSS ++   V    +P+          RY++ +K P PK+S D+ L
Sbjct: 137 FSSDKKQFYVKKEPFPVPCTEPTTSGDRYTVRMKAPTPKYSTDNHL 182


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +3

Query: 612 IHTMIVPVVVWEVMFWPRKPKSHYRNIAQLAIHMLAYIFVLHFTYHEHGVWLYPIFKAVQ 791
           I+ +     VW++    R    H   I    IH +A +FV+ F+Y  + ++  P + + +
Sbjct: 120 IYALTAGYFVWDLYITVRYV--HITGIG-FVIHAIAALFVITFSYRPYLMYYGPTYLSWE 176

Query: 792 GTIHFYLLHFYV 827
            +  F  +H+++
Sbjct: 177 LSTPFLNIHYFL 188


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 153 KLLIA*VNTTMSYQIYFRLLGYVLSIAMHMSNLLYIQYAILSANVSEESME--NFGTGTF 326
           KL +  ++ T+S  +Y+ LLG +    + M    Y+QY   S    E+ +E   +     
Sbjct: 284 KLSVEEISITLSDHMYYSLLGVIDYFRVVMKQQYYLQYRPKS-TPKEKPLEWFKYAILVV 342

Query: 327 KNM--EYRYFTTW 359
           K+   E RY  TW
Sbjct: 343 KDSVHESRYHWTW 355


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 426 RHKENYKLPKYLGSSREIIFAGLVWPSSWVVFTVFWTLLHY 548
           R+ E  KL +++G    + F  +++PSS +     WT+LH+
Sbjct: 499 RNPEQVKLYQFMGKDN-VPFHTVIFPSSLLGTGEKWTMLHH 538


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +3

Query: 399 LCDLLVLLNRHKENYKLPKYLGSSREIIFAGLVWPSSWV--VFTVFWTLLHYDRS 557
           +C  +V+    ++ Y L  Y GSSRE           W   +    WT L YD S
Sbjct: 315 VCHRMVIDTSQQKLYLLGNYFGSSRETEVPPDARTDFWEFDISKKVWTCLSYDTS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,535,698
Number of Sequences: 5004
Number of extensions: 94451
Number of successful extensions: 227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)