Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A11
         (1253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   7.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 299 HGEFRNRHLQKYGVSIFYYLDRRSKDRICGAGYTLRSSGAAK*TQRELQ 445
           HGE R   LQK G+ + Y++ R  K  I     +L S   A+ ++R ++
Sbjct: 428 HGEDREEALQKAGI-VTYFIVRALKPFIPAVTKSLASLTDAENSRRAME 475


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +2

Query: 752 ARRLAVPDLQSSSRNDTFLSAPLLCRSYVLDVLQASVVVELCDPRRRXR*EDXLHXSSC 928
           A  LAV  L    R       P + RS VLD L   V++   + RR    E     ++C
Sbjct: 289 ASALAVVTLNLHHRGVRGTRVPGIVRSLVLDKLARIVLLNFQEERRSEPVEPPRRKNNC 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 282 NVSEESMENFGTGTFKNMEYRYFTTWTAGLKIGYAALGTLCDL--LVLLN 425
           ++ E  + NF  G+F+N++ +       G  IG  + G L DL  L +LN
Sbjct: 460 DLGENRISNFYNGSFRNLD-QLTGLRLIGNDIGNLSRGMLWDLPNLQILN 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,561
Number of Sequences: 438
Number of extensions: 7214
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42862491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)