Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A10
         (1310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.62 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = -3

Query: 576 PPXPPFFXXXPFPPPPPGXXN*XXXXPEXXPXPXPXFPGVSPXXXXR*TPPP 421
           PP  P     P PPPPPG            P P P  P VS        P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG------AGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = -1

Query: 542 SPPXPPGXXIXKXXXXKXPXXPTPXSPGFPXXXXPXKPPPPXPXXFXFXXPP 387
           SPP PP   I           P P  P  P    P  PPPP P       PP
Sbjct: 731 SPPPPPPAVIVPTPAPA----PIPVPPPAPIMGGP--PPPPPPPGVAGAGPP 776



 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = -1

Query: 575 PPXPXFFXXTLSPPXPPGXXIXKXXXXKXPXXPTPXSPGFPXXXXPXKPPPP 420
           PP P     T   P P    +           P P  PG      P  PPPP
Sbjct: 734 PPPPAVIVPT---PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 479 PTPXSPGFPXXXXPXKPPPP 420
           P P  PGF     P  PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 576 PPXPPFFXXXPFPPPPP 526
           PP PP F     PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 458 TPGKXGXGXGXXSGXXXX*FXXPGGGGGKGXXXKXGGKGG 577
           TPG  G   G   G         G GGG+G   + GG+GG
Sbjct: 4   TPGSRGGRGGSRGGRGGFNGGRGGFGGGRGG-ARGGGRGG 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.149    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,660
Number of Sequences: 5004
Number of extensions: 16894
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)