Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_A09
(1279 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 30 0.60
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 28 3.2
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 4.2
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 27 4.2
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 5.6
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 5.6
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 7.3
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 7.3
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 9.7
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 26 9.7
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 30.3 bits (65), Expect = 0.60
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Frame = +2
Query: 377 EDPDEYCLGAMYKNGTDSSSGIISIALVCFEPSLKANDIETSGILTLISVVF-------- 532
E+ D Y L ++ +S G++ I ++C L N + I++ +S F
Sbjct: 32 ENTDTYALTPLFYWIRSTSVGLLLITIIC-HLFLLLNIFISIPIISHLSPGFMPVGFTAL 90
Query: 533 ---LLATFAVYTYFPNL--RDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGF 697
LLA ++ Y PN R Q + ++I + + FLS +L+ G+R + L F
Sbjct: 91 AAILLAMQIMFVYSPNAPERVTQRIICFLLAIDVLVVFLS-PILRHREGWRSNAFVLWAF 149
Query: 698 VVYTWMIAT 724
++ W++ T
Sbjct: 150 LMSLWIVIT 158
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 598 HVYEHKYGAWILVIGSTATEYRV----PSRFMYIDRIRRVHLDD 717
H+Y H YG L G TAT YRV +F+ +++RRV + D
Sbjct: 68 HIY-HVYGLHGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRD 110
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 357 LQILFSPKILMSIVSVPCTKTVQTLVRELSPLR-LYASN 470
LQ+ SP +L V+ PC K++ ++REL + Y SN
Sbjct: 178 LQVYTSPNLLR--VNAPCRKSLSEMLRELKDIEDDYGSN 214
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 544 FRCVHIFSKFKRPPRLMLHVYEH 612
+RC F RP L +H Y H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSH 490
>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 404 AMYKNGT-DSSSGIISIALVCFEPSLKANDI 493
A+YK G + G I I VC +P+L+ N +
Sbjct: 134 ALYKTGLLKNPKGFIHIHFVCVDPALQGNGV 164
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 5.6
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 759 VVQCSTLLAW--RNRIESNFCGTVVTRGAVL*HYSLWPSLRPSSTETTGNQVLVNRVVGS 932
+V C +L+A R R+ +N V ++ LW L S + T L + ++
Sbjct: 68 LVICKSLIALLGRKRLSANVRKIVRFLNVIICVIGLWKGLSAMSGKNTFINGLQSYLISE 127
Query: 933 TVAPKHGSF 959
T P+ GSF
Sbjct: 128 TALPELGSF 136
>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 100
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 517 NLCSVFISDFRCVHIFSKFKRPPRLMLHVYEH 612
++CS+F+S C H + K PP + H Y H
Sbjct: 3 SVCSIFLS---CSHRVIQAKHPPFPLFHSYFH 31
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 505 NTNI-NLCSVFISDFRCVHIFSKF 573
N NI N+ ++I FRC+HI +F
Sbjct: 93 NENIVNIFDLYIDQFRCLHIVMEF 116
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -2
Query: 564 KYVYTAKVANKNTTEINVSIPLVSMSLALSDGSKHTSAMEIIPELESVP 418
KY + + ++ + IP +S SL L DGS ++ + S+P
Sbjct: 239 KYGFVVIIIVGELNDVELKIPAISHSLKLKDGSILVLRSSLLHQWYSLP 287
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 764 SVLNASRLAKSDRKQFLWYSCYAWGGTLALLFVAI 868
S+ + + L DR + L+Y C W G L L +AI
Sbjct: 364 SICSENNLRLIDRLK-LYYGCGQWAGKLFCLLIAI 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,586,518
Number of Sequences: 5004
Number of extensions: 97885
Number of successful extensions: 290
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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