Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A09
         (1279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   3.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   3.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   7.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   7.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 406 GTETILIRIFGENKIWSVLSRHLIS 332
           G +  LI IFGE+   S +S HLIS
Sbjct: 241 GGDPELITIFGESAGGSSVSLHLIS 265


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 406 GTETILIRIFGENKIWSVLSRHLIS 332
           G +  LI IFGE+   S +S HLIS
Sbjct: 241 GGDPELITIFGESAGGSSVSLHLIS 265


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 587 LGGLLNLENMCTQRKSLIKTLQRLMLVFRLSQCRWP*AMVRSIQAQWR 444
           L    N+E   +   S+   L+RL L+F  S  +W  +   ++   WR
Sbjct: 462 LSAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQW--SSTHTLDVAWR 507


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 587 LGGLLNLENMCTQRKSLIKTLQRLMLVFRLSQCRWP*AMVRSIQAQWR 444
           L    N+E   +   S+   L+RL L+F  S  +W  +   ++   WR
Sbjct: 500 LSAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQW--SSTHTLDVAWR 545


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 387 MSIVSVPCTKTVQTLVRELSPLRLYASNHRLRPTTLRQAE 506
           M+  S     T+QTL  ++SP R     +RL    L Q++
Sbjct: 398 MATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQ 437


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 906 VLVNRVVGSTVAPKHGS 956
           V VNR + S V P HGS
Sbjct: 261 VTVNRQLNSDVQPGHGS 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,976
Number of Sequences: 438
Number of extensions: 6695
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)