Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A08
         (1257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    31   1.4  
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    29   5.8  
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    29   5.8  
09_01_0004 - 133130-133897                                             29   7.7  

>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 68  RGNR*XLENPGLRVTEIAKKGGEIWKSM 151
           RGN     NP L  TEIAKK GE+W+ M
Sbjct: 614 RGNM-KNNNPDLPTTEIAKKLGEMWQKM 640


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 107 VTEIAKKGGEIWKSMKDK 160
           V+ +AK+GGE WKSM D+
Sbjct: 120 VSAVAKEGGERWKSMSDE 137


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 92  NPGLRVTEIAKKGGEIWKSM 151
           NP L  TEIAKK GE W+ M
Sbjct: 580 NPELATTEIAKKLGERWQKM 599


>09_01_0004 - 133130-133897
          Length = 255

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 220 LQCQWRWWRRGRKEGSKTREKG 285
           L+C+ RWWRR R+ G      G
Sbjct: 93  LRCRERWWRRRRRTGDAAEAAG 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,126,647
Number of Sequences: 37544
Number of extensions: 330631
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3887643768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)