Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_A08
(1257 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M86737-1|AAA58660.1| 709|Homo sapiens high mobility group box p... 38 0.10
BC091486-1|AAH91486.1| 633|Homo sapiens SSRP1 protein protein. 38 0.10
BC005116-1|AAH05116.1| 709|Homo sapiens structure specific reco... 38 0.10
Z17240-1|CAA78938.1| 186|Homo sapiens HMG2B protein. 32 3.8
X62534-1|CAA44395.1| 209|Homo sapiens HMG-2 protein. 32 3.8
M83665-1|AAA58659.1| 209|Homo sapiens high mobility group 2 pro... 32 3.8
BT019783-1|AAV38586.1| 208|Homo sapiens high-mobility group box... 32 3.8
BT019782-1|AAV38585.1| 209|Homo sapiens high-mobility group box... 32 3.8
BC100019-1|AAI00020.1| 209|Homo sapiens HMGB2 protein protein. 32 3.8
BC001063-1|AAH01063.1| 209|Homo sapiens high-mobility group box... 32 3.8
Y10043-1|CAA71143.1| 200|Homo sapiens high mobility group prote... 31 6.7
BC103851-1|AAI03852.1| 130|Homo sapiens HMG4L protein protein. 31 6.7
BC103850-1|AAI03851.1| 130|Homo sapiens HMG4L protein protein. 31 6.7
BC103849-1|AAI03850.1| 130|Homo sapiens HMG4L protein protein. 31 6.7
BC070482-1|AAH70482.1| 200|Homo sapiens HMGB3 protein protein. 31 6.7
AK128128-1|BAC87286.1| 222|Homo sapiens protein ( Homo sapiens ... 31 8.8
>M86737-1|AAA58660.1| 709|Homo sapiens high mobility group box
protein.
Length = 709
Score = 37.5 bits (83), Expect = 0.10
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIWKSM--KDKTEW 169
++PG+ +T+++KK GEIWK M + K EW
Sbjct: 568 DHPGISITDLSKKAGEIWKGMSKEKKEEW 596
>BC091486-1|AAH91486.1| 633|Homo sapiens SSRP1 protein protein.
Length = 633
Score = 37.5 bits (83), Expect = 0.10
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIWKSM--KDKTEW 169
++PG+ +T+++KK GEIWK M + K EW
Sbjct: 568 DHPGISITDLSKKAGEIWKGMSKEKKEEW 596
>BC005116-1|AAH05116.1| 709|Homo sapiens structure specific
recognition protein 1 protein.
Length = 709
Score = 37.5 bits (83), Expect = 0.10
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIWKSM--KDKTEW 169
++PG+ +T+++KK GEIWK M + K EW
Sbjct: 568 DHPGISITDLSKKAGEIWKGMSKEKKEEW 596
>Z17240-1|CAA78938.1| 186|Homo sapiens HMG2B protein.
Length = 186
Score = 32.3 bits (70), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIW--KSMKDKTEWXXXXXXXXXXXXXDLESYNA 229
E+PGL + + AKK GE+W +S KDK + D+ +Y A
Sbjct: 93 EHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYGA 141
>X62534-1|CAA44395.1| 209|Homo sapiens HMG-2 protein.
Length = 209
Score = 32.3 bits (70), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIW--KSMKDKTEWXXXXXXXXXXXXXDLESYNA 229
E+PGL + + AKK GE+W +S KDK + D+ +Y A
Sbjct: 116 EHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
>M83665-1|AAA58659.1| 209|Homo sapiens high mobility group 2
protein protein.
Length = 209
Score = 32.3 bits (70), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIW--KSMKDKTEWXXXXXXXXXXXXXDLESYNA 229
E+PGL + + AKK GE+W +S KDK + D+ +Y A
Sbjct: 116 EHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
>BT019783-1|AAV38586.1| 208|Homo sapiens high-mobility group box 2
protein.
Length = 208
Score = 32.3 bits (70), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIW--KSMKDKTEWXXXXXXXXXXXXXDLESYNA 229
E+PGL + + AKK GE+W +S KDK + D+ +Y A
Sbjct: 116 EHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
>BT019782-1|AAV38585.1| 209|Homo sapiens high-mobility group box 2
protein.
Length = 209
Score = 32.3 bits (70), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIW--KSMKDKTEWXXXXXXXXXXXXXDLESYNA 229
E+PGL + + AKK GE+W +S KDK + D+ +Y A
Sbjct: 116 EHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
>BC100019-1|AAI00020.1| 209|Homo sapiens HMGB2 protein protein.
Length = 209
Score = 32.3 bits (70), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIW--KSMKDKTEWXXXXXXXXXXXXXDLESYNA 229
E+PGL + + AKK GE+W +S KDK + D+ +Y A
Sbjct: 116 EHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
>BC001063-1|AAH01063.1| 209|Homo sapiens high-mobility group box 2
protein.
Length = 209
Score = 32.3 bits (70), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 ENPGLRVTEIAKKGGEIW--KSMKDKTEWXXXXXXXXXXXXXDLESYNA 229
E+PGL + + AKK GE+W +S KDK + D+ +Y A
Sbjct: 116 EHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
>Y10043-1|CAA71143.1| 200|Homo sapiens high mobility group protein
2a protein.
Length = 200
Score = 31.5 bits (68), Expect = 6.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 92 NPGLRVTEIAKKGGEIWKSMKD 157
NPG+ + ++AKK GE+W ++ D
Sbjct: 115 NPGISIGDVAKKLGEMWNNLND 136
>BC103851-1|AAI03852.1| 130|Homo sapiens HMG4L protein protein.
Length = 130
Score = 31.5 bits (68), Expect = 6.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 92 NPGLRVTEIAKKGGEIWKSMKD 157
NPG+ + ++AKK GE+W ++ D
Sbjct: 51 NPGISIGDVAKKLGEMWNNLND 72
>BC103850-1|AAI03851.1| 130|Homo sapiens HMG4L protein protein.
Length = 130
Score = 31.5 bits (68), Expect = 6.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 92 NPGLRVTEIAKKGGEIWKSMKD 157
NPG+ + ++AKK GE+W ++ D
Sbjct: 51 NPGISIGDVAKKLGEMWNNLND 72
>BC103849-1|AAI03850.1| 130|Homo sapiens HMG4L protein protein.
Length = 130
Score = 31.5 bits (68), Expect = 6.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 92 NPGLRVTEIAKKGGEIWKSMKD 157
NPG+ + ++AKK GE+W ++ D
Sbjct: 51 NPGISIGDVAKKLGEMWNNLND 72
>BC070482-1|AAH70482.1| 200|Homo sapiens HMGB3 protein protein.
Length = 200
Score = 31.5 bits (68), Expect = 6.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 92 NPGLRVTEIAKKGGEIWKSMKD 157
NPG+ + ++AKK GE+W ++ D
Sbjct: 115 NPGISIGDVAKKLGEMWNNLND 136
>AK128128-1|BAC87286.1| 222|Homo sapiens protein ( Homo sapiens
cDNA FLJ46249 fis, clone TESTI4021377. ).
Length = 222
Score = 31.1 bits (67), Expect = 8.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 320 SFSWI*QQQFSCPFSLVFEPSFR-PLRHHRHWHCKILGLLHIAPWPW 183
S +W+ +SCP L+F P L +H W C GL PW W
Sbjct: 112 SMAWL----WSCPALLLFCPGTALALPYHWLWSCPYAGLTVPLPWLW 154
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,533,858
Number of Sequences: 237096
Number of extensions: 1933924
Number of successful extensions: 3986
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3986
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17945070980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -