Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A08
         (1257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-14|CAB54448.2|   95|Caenorhabditis elegans Hypothetical...    34   0.18 
AF056576-1|AAC78598.1|   95|Caenorhabditis elegans high mobility...    34   0.18 
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    33   0.43 
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    33   0.56 
U22831-3|AAK67237.1|  234|Caenorhabditis elegans Hmg protein 1.2...    29   9.2  
U22831-2|AAK67238.1|  233|Caenorhabditis elegans Hmg protein 1.2...    29   9.2  
U22831-1|AAK20071.1|  235|Caenorhabditis elegans Hmg protein 1.2...    29   9.2  
AF056577-1|AAC78599.1|  235|Caenorhabditis elegans high mobility...    29   9.2  

>AL110490-14|CAB54448.2|   95|Caenorhabditis elegans Hypothetical
           protein Y48B6A.14 protein.
          Length = 95

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 74  NR*XLENPGLRVTEIAKKGGEIWKSMKDKTEWXXXXXXXXXXXXXDLESY 223
           NR  ++ PG+ V ++AK  G  W  + DK+ W             D+ +Y
Sbjct: 42  NRERIKKPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEVDIANY 91


>AF056576-1|AAC78598.1|   95|Caenorhabditis elegans high mobility
           group protein 1.1 protein.
          Length = 95

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 74  NR*XLENPGLRVTEIAKKGGEIWKSMKDKTEWXXXXXXXXXXXXXDLESY 223
           NR  ++ PG+ V ++AK  G  W  + DK+ W             D+ +Y
Sbjct: 42  NRERIKKPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEVDIANY 91


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 33.1 bits (72), Expect = 0.43
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 74  NR*XLENPGLRVTEIAKKGGEIWKSMK--DKTEWXXXXXXXXXXXXXDLESYNAN 232
           +R  L+  G  V ++AKKGG  WK+M   DK +W             +++ Y  N
Sbjct: 570 SRNELKEDGDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKN 624


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 32.7 bits (71), Expect = 0.56
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 74  NR*XLENPGLRVTEIAKKGGEIWKSMK--DKTEWXXXXXXXXXXXXXDLESYNAN 232
           NR  ++  G  + ++AKK G  WKSM   DK EW             +++ Y  N
Sbjct: 575 NRNSMKEDGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKN 629


>U22831-3|AAK67237.1|  234|Caenorhabditis elegans Hmg protein 1.2,
           isoform b protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  NPGLRVTEIAKKGGEIWKSMKD 157
           N  ++VTEI+KK  E WK+M D
Sbjct: 68  NENVQVTEISKKCSEKWKTMVD 89


>U22831-2|AAK67238.1|  233|Caenorhabditis elegans Hmg protein 1.2,
           isoform c protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  NPGLRVTEIAKKGGEIWKSMKD 157
           N  ++VTEI+KK  E WK+M D
Sbjct: 69  NENVQVTEISKKCSEKWKTMVD 90


>U22831-1|AAK20071.1|  235|Caenorhabditis elegans Hmg protein 1.2,
           isoform a protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  NPGLRVTEIAKKGGEIWKSMKD 157
           N  ++VTEI+KK  E WK+M D
Sbjct: 69  NENVQVTEISKKCSEKWKTMVD 90


>AF056577-1|AAC78599.1|  235|Caenorhabditis elegans high mobility
           group protein 1.2 protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  NPGLRVTEIAKKGGEIWKSMKD 157
           N  ++VTEI+KK  E WK+M D
Sbjct: 69  NENVQVTEISKKCSEKWKTMVD 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,359
Number of Sequences: 27780
Number of extensions: 320956
Number of successful extensions: 655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)