Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A06
         (1283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect(2) = 3.3
 Identities = 16/69 (23%), Positives = 18/69 (26%)
 Frame = -3

Query: 630 KPPPPPPXPXXXXXSHXXXXXXXXRXXWXPXKPXPXQFXQXSLFFPAFXXXXXPXXPXXX 451
           K PPPPP P                    P  P P      S+  P       P  P   
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368

Query: 450 SXLXPXXPP 424
           +      PP
Sbjct: 369 APSTGRQPP 377



 Score = 21.0 bits (42), Expect(2) = 3.3
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = -3

Query: 684 PXXPTPXPXXXXXXXXXXKPPPPPPXP 604
           P  P P            K  PPPP P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPP 316


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 684 PXXPTPXPXXXXXXXXXXKPPPPPP 610
           P  P P P           PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,481
Number of Sequences: 5004
Number of extensions: 22815
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)