Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_A06
(1283 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 29 0.038
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 27 0.50
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 31 2.0
07_01_0176 - 1244704-1245102 31 2.0
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 31 2.0
08_01_0060 - 413088-413999 24 5.5
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 25 5.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.0
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 24 6.6
03_05_0576 + 25765137-25766420 29 7.9
>07_01_0080 + 587674-588510
Length = 278
Score = 29.5 bits (63), Expect(2) = 0.038
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 699 GNGXXPXXPTPXPXXXXXXXXXXKPPPPPPXP 604
G+G P P P PPPPPP P
Sbjct: 84 GDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPP 115
Score = 26.2 bits (55), Expect(2) = 0.038
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 627 PPPPPPXPXXXXXSH 583
PPPPPP P SH
Sbjct: 114 PPPPPPPPLFTRRSH 128
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 27.5 bits (58), Expect(2) = 0.50
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 684 PXXPTPXPXXXXXXXXXXKPPPPPPXP 604
P PTP P PPP PP P
Sbjct: 68 PAPPTPSPVPEHLHHHPPPPPPVPPCP 94
Score = 24.2 bits (50), Expect(2) = 0.50
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -3
Query: 627 PPPPPPXPXXXXXSH 583
PPPPPP P H
Sbjct: 120 PPPPPPHPPEDPPPH 134
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 684 PXXPTPXPXXXXXXXXXXKPPPPPPXP 604
P P P P KPPPPPP P
Sbjct: 329 PAPPPPPPPPSRFNNTTPKPPPPPPPP 355
>07_01_0176 - 1244704-1245102
Length = 132
Score = 31.1 bits (67), Expect = 2.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 605 GXGGGGGGFXXXXXXXXXXGXGVGXWG 685
G GGGGGGF G G G WG
Sbjct: 40 GGGGGGGGFFEVPWFGPPGGGGWGAWG 66
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 684 PXXPTPXPXXXXXXXXXXKPPPPPPXP 604
P P P P KPPPPPP P
Sbjct: 354 PPPPPPPPPPPPKLNTAPKPPPPPPPP 380
>08_01_0060 - 413088-413999
Length = 303
Score = 24.2 bits (50), Expect(2) = 5.5
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -3
Query: 627 PPPPPPXPXXXXXSH 583
PPPPPP P H
Sbjct: 33 PPPPPPPPLPFHLHH 47
Score = 23.8 bits (49), Expect(2) = 5.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 630 KPPPPPPXP 604
+PPPPPP P
Sbjct: 28 QPPPPPPPP 36
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 24.6 bits (51), Expect(2) = 5.6
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = -3
Query: 675 PTPXPXXXXXXXXXXKPPPPPPXP 604
P P P +PP PPP P
Sbjct: 170 PVPYPYAGQWCCPKPEPPKPPPEP 193
Score = 23.4 bits (48), Expect(2) = 5.6
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -3
Query: 630 KPPPPPPXPXXXXXSH 583
KP PPPP P H
Sbjct: 214 KPAPPPPPPCGCSGGH 229
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 6.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 684 PXXPTPXPXXXXXXXXXXKPPPPPPXP 604
P P P P +PPPPPP P
Sbjct: 566 PPPPPPPPPLPQSNYASSQPPPPPPPP 592
Score = 29.1 bits (62), Expect = 7.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 684 PXXPTPXPXXXXXXXXXXKPPPPPPXP 604
P P P P PPPPPP P
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPP 570
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -3
Query: 696 NGXXPXXPTPXPXXXXXXXXXXKPPPPPPXP 604
N P P P P PPPPPP P
Sbjct: 596 NCLVPSPPPPPPPPPILPNRSVPPPPPPPPP 626
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 24.2 bits (50), Expect(2) = 6.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 630 KPPPPPPXP 604
+PPPPPP P
Sbjct: 223 RPPPPPPPP 231
Score = 23.4 bits (48), Expect(2) = 6.6
Identities = 9/25 (36%), Positives = 9/25 (36%)
Frame = -3
Query: 684 PXXPTPXPXXXXXXXXXXKPPPPPP 610
P P P PPPPPP
Sbjct: 206 PPMAAPAPPQTNPPRPVRPPPPPPP 230
>03_05_0576 + 25765137-25766420
Length = 427
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 702 RGNGXXPXXPTPXPXXXXXXXXXXKPPPPPPXP 604
RG P P+P P PPPPP P
Sbjct: 62 RGGPEAPPSPSPSPSPSPPPQPSSPPPPPPSPP 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,994,487
Number of Sequences: 37544
Number of extensions: 301468
Number of successful extensions: 6858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5404
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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