Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A05
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   383   e-107
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    29   1.4  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   7.3  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   9.7  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 433

 Score =  383 bits (942), Expect = e-107
 Identities = 185/271 (68%), Positives = 221/271 (81%), Gaps = 3/271 (1%)
 Frame = +2

Query: 206  YKIADEXLAEWGRKXIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 385
            YK+AD  LA +GRK + +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6    YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 386  LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 562
            L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66   LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 563  LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSV 742
            LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E  LKVPAINVNDSV
Sbjct: 126  LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185

Query: 743  TKSKFDNLYGCRESLLDGIKRATDIMIAGKVCVVAGYGDVGKGCAQAFK--GLAVE*SLP 916
            TKSKFDNL+GC+ESL+DGIKRATD+MIAGKV VVAG+GDVGKGC+ + +  G  V  +  
Sbjct: 186  TKSKFDNLFGCKESLVDGIKRATDVMIAGKVAVVAGFGDVGKGCSTSLRSQGARVIVTEV 245

Query: 917  KSIHQRTSGRNGRFQVTTMEEAXXVGQILXT 1009
              I+   +  +G F+VTTMEEA   GQI  T
Sbjct: 246  DPINALQAAMDG-FEVTTMEEAVKEGQIFVT 275


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 713 VPAINVNDSVTKSKFDNLYGCRESLLDGIKRATDIMIAGKVCVVA 847
           +PA+    +V  S  DN   CR+ L+   KR  +IM+  K C VA
Sbjct: 347 IPALQKELNVELSPLDNSENCRKQLISIFKRC-EIMLP-KTCTVA 389


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 892 TFERLGASFSNVTITCHYTNFPGNHYVCCPFDSVEQRL 779
           ++E    SFS+VTI C  + F  + ++ C   S  ++L
Sbjct: 610 SYENYKQSFSDVTIYCGTSMFHSHKFILCARSSFLRKL 647


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 696 RNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 556
           RN+L++ CT   +     +  F++ G L + K VK P + + + RGF
Sbjct: 282 RNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,089,480
Number of Sequences: 5004
Number of extensions: 84925
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)