Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A05
         (1272 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888    136   5e-32
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    30   3.4  
03_01_0515 - 3864796-3865425                                           29   5.9  
11_06_0445 - 23679918-23680282,23680415-23683349                       29   7.8  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score =  136 bits (328), Expect = 5e-32
 Identities = 64/93 (68%), Positives = 73/93 (78%)
 Frame = +2

Query: 611 TKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSVTKSKFDNLYGCRESLL 790
           +KY  + + + G++EETTTGV  LY+M   G L  PAINVNDSVTKSKFDNLYGCR SL 
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDSVTKSKFDNLYGCRHSLP 215

Query: 791 DGIKRATDIMIAGKVCVVAGYGDVGKGCAQAFK 889
           DG+ RATD+MIAGKV VV GYGDVGKGCA A K
Sbjct: 216 DGLMRATDVMIAGKVAVVCGYGDVGKGCAAALK 248



 Score = 99.5 bits (237), Expect = 5e-21
 Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
 Frame = +2

Query: 272 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDE 448
           MPGLMACR ++ P++  KGARI+GSLH T+Q AVLIETL  LG         ++      
Sbjct: 1   MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPR 60

Query: 449 AAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVH 610
                      ++AWKGET +EY WC E+ L +  G   ++I+DDGGD T L+H
Sbjct: 61  RRPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAGPDLIVDDGGDATLLIH 114


>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 825 PGKFV*WQVMVTLEKDAPKRSKVWR*SDRYRNRSINALQAXMEGFK 962
           P  F  WQV +T+EK+   R   +  +D Y N +  +    +E FK
Sbjct: 791 PNLFEDWQVALTVEKNVASRRVHYPPADEYLNHAEKSDMTLVEAFK 836


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -3

Query: 526 TPNILVISFSLPGIDGYSYGNQC-SCGLVLCTINVTAGPLYLCSQFY*SLNKNRCLYCHV 350
           +P   V  +++  +  ++  + C + G  L  +NV +G    CS        N  L  +V
Sbjct: 123 SPVTNVNDYTIQQVGKFAVQSYCLNTGAKLVYVNVVSGQTQPCS----GGGSNYQLVINV 178

Query: 349 *AAGYSGTFEYFSWSIFPTTCHKAWHF 269
            A   +  +  F W I  TT  K W F
Sbjct: 179 AAGVRTAQYSVFVWGILGTTTWKLWSF 205


>11_06_0445 - 23679918-23680282,23680415-23683349
          Length = 1099

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 557  KPLNMILDDGGDLTNLVHTKYPDLLKDV 640
            +P + I  DG DL N V + +PD + D+
Sbjct: 1007 QPTDEIFQDGMDLHNFVESAFPDQISDI 1034


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,459,233
Number of Sequences: 37544
Number of extensions: 542511
Number of successful extensions: 1263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)