Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A04
         (1338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.039
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.63 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   7.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 31/90 (34%), Positives = 31/90 (34%)
 Frame = +3

Query: 315 GGXGXPXGGGXXGPXIXKXFGGXGXXPXKXGGKKXFFXENXGXFGFFGXPXXGXKKFXXX 494
           GG G   GG   GP     FGG G      GG   F     G  GF G P          
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF---GGGPGGFEGGPGGFG---GGP 244

Query: 495 XXFFFFFXGXGGGXGGFXRXKKPPXXGGXG 584
             F     G GGG GGF     P   GG G
Sbjct: 245 GGFGGGLGGFGGGPGGFGGG--PGGHGGPG 272



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 GGGXGGFXRXK--KPPXXGGXGVXFWGPXPXPXXXXXXXXXXGGGXXFXXXXGGXXGXPX 698
           GGG GGF       PP  GG G  F G               GG   F    GG  G P 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFG-GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245

Query: 699 XGG 707
             G
Sbjct: 246 GFG 248


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 598 PQXXTPXPPXXGGFFXRXKPPXPPPXPXKKKK 503
           P    P PP   GF    +PP PPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 597 PKXXPPXPXGXXVFXXXKNPPXPPPXXEKKKKXK 496
           P   PP P         + PP PPP   KK+K K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -1

Query: 597 PKXXPPXPXGXXVFXXXKNPPXPPPXXEKKKK 502
           P   PP P     F     PP PPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 386 PXPPKXFXNXGXPXPPPXXXTPPPXP 309
           P PP+       P PP     PPP P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,823
Number of Sequences: 5004
Number of extensions: 23762
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 735255860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)