Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A03
         (1247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    35   0.020
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   1.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    28   2.4  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   4.1  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   5.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   5.4  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    27   7.2  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 35.1 bits (77), Expect = 0.020
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 66  LEXTFAVSERLADGRVLEXELKPGGRDVAVTERNKK 173
           L+ TF+V +    G V+  +LKP GR++ VTE NK+
Sbjct: 565 LDLTFSVEDNCF-GEVVTIDLKPNGRNIEVTEENKR 599


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -2

Query: 241 TSHSVCSATPLSTLHRTTRSRYSFLFLSVTATSRPPGFNSXSNTLPSANRSDTANVNSS 65
           TS +  S+TPL++ + TT +  S    S   +S  P  +  S  L SAN +   + +S+
Sbjct: 381 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 439



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -2

Query: 241 TSHSVCSATPLSTLHRTTRSRYSFLFLSVTATSRPPGFNSXSNTLPSANRSDTANVNSS 65
           TS +  S+TPL++ + TT +  S    S   +S  P  +  S  L SAN +   + +S+
Sbjct: 495 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 553


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -2

Query: 520 LQIRRTLKPDLLSLTFRKVCVFKGALPT----EFLAGSSE 413
           +   RT KPD L   F KVC+    LP      FL G  E
Sbjct: 597 IHFNRTTKPDYLQDAFDKVCLIHKRLPAGSILVFLTGQQE 636


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 66  LEXTFAVSERLADGRVLEXELKPGGRDVAVTERNKK 173
           L+ TF+V E    G V   EL   G ++ VTE NKK
Sbjct: 584 LDLTFSVEEDHF-GEVRTVELITNGENIEVTEENKK 618


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 876 MCIITCHRTFSNICNVRLKLQITF 805
           +CI  CH+  SN+C++  K + TF
Sbjct: 86  ICIRQCHKCESNVCSMCSKQERTF 109


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 78   FAVSERLADGRVLEXELKPGGRDVAVTERNKKXXXXXXXXXXXXXXXXXQTEWLVRGFHE 257
            FAV E+   G     +L P GR++ VTE NK+                 Q + L+ GF +
Sbjct: 3027 FAV-EKDVFGEKTVVDLIPNGRNIPVTELNKQNYVNRMVDYKLRESVKDQLKSLLDGFSD 3085

Query: 258  VASS 269
            +  S
Sbjct: 3086 IIPS 3089


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 217 TPLSTLHRTTRSRYSFLFLSVTATSRPPGFNSXSNTLPSANRSDTANVNSSD-DNVK 50
           T +S+ HR TRS+     LS +A       +   + L S  RS +++   SD DN K
Sbjct: 34  TVVSSTHRQTRSQSKKPSLSSSAEPPSESLDDNISALNSLQRSASSSEKGSDEDNEK 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,693,710
Number of Sequences: 5004
Number of extensions: 69555
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)