Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A03
         (1247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    33   0.56 
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    33   0.56 
Z79639-3|CAB01918.1|  385|Caenorhabditis elegans Hypothetical pr...    31   2.2  
AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    30   3.0  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    30   3.0  
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    29   9.1  

>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 32.7 bits (71), Expect = 0.56
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 60   SSLEXTFAVSERLADGRVLEXELKPGGRDVAVTERN 167
            S L+  F++ E+ ADG+ +   LKP G +V V + N
Sbjct: 2741 SELDTDFSIVEQSADGKAVTVNLKPNGDEVLVNKDN 2776


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 32.7 bits (71), Expect = 0.56
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 60   SSLEXTFAVSERLADGRVLEXELKPGGRDVAVTERN 167
            S L+  F++ E+ ADG+ +   LKP G +V V + N
Sbjct: 2741 SELDTDFSIVEQSADGKAVTVNLKPNGDEVLVNKDN 2776


>Z79639-3|CAB01918.1|  385|Caenorhabditis elegans Hypothetical
           protein F54E4.4 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -2

Query: 316 K*PLKAISIGRGEKKGELATSWN--PRTSHSVCSATPLSTLHRTTRSRYSFLFLSVTATS 143
           K P K +S    +++  LA S N  P T  S  + TPL+T+  T  +  +    +VT+T+
Sbjct: 109 KKPKKRLSFVNSQEERILAKSLNFLPTTIEST-TTTPLTTITSTVSATTTVTTQTVTSTT 167

Query: 142 RPP 134
            PP
Sbjct: 168 NPP 170


>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 105 GRVLEXELKPGGRDVAVTERNKKXXXXXXXXXXXXXXXXXQTEWLVRGFHEV 260
           G +   ELK GG ++AVTE NK                  QT+    GF+ V
Sbjct: 602 GELKTYELKEGGTEIAVTEENKLEYIELLVEWRFNRGVEQQTKAFFTGFNSV 653


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 105 GRVLEXELKPGGRDVAVTERNKKXXXXXXXXXXXXXXXXXQTEWLVRGFHEV 260
           G +   ELK GG ++AVTE NK                  QT+    GF+ V
Sbjct: 604 GELKTYELKEGGTEIAVTEENKLEYIELLVEWRFNRGVEQQTKAFFTGFNSV 655


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 60  SSLEXTFAVSERLADGRVLEXELKPGGRDVAVTERNKK 173
           + LE TF++ + +  G     EL P G +V VTE NK+
Sbjct: 541 ADLELTFSLDDSIF-GETQNIELIPNGANVPVTEDNKE 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,831,364
Number of Sequences: 27780
Number of extensions: 403527
Number of successful extensions: 1087
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3464240056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)