Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A03
         (1247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   9.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   9.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   9.7  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 662 FSLYTKLVLRCRRCARETRSILLLYSLRNRSQKVGLRLLYAIYP 531
           FSL+ + +   R C     S+   Y+LRN  +++    + A+YP
Sbjct: 182 FSLFARFLKNPRPCNVLATSLTEPYTLRNYGRRINCTYV-ALYP 224


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 127 NSXSNTLPSANRSDTANVNSSD 62
           N+ SN+LP  +R+    +NS D
Sbjct: 307 NNDSNSLPFIDRTPIEIINSGD 328


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 492 TCCL*RSERSVCLRELCPLSFSPDLL 415
           T CL RSE + C   +  +S SPDL+
Sbjct: 172 TDCL-RSELAQCESNIKVISISPDLV 196


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 127 NSXSNTLPSANRSDTANVNSSD 62
           N+ SN+LP  +R+    +NS D
Sbjct: 307 NNDSNSLPFIDRTPIEIINSGD 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,521
Number of Sequences: 438
Number of extensions: 5083
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42622365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)