Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A02
         (1223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    38   0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.14 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   9.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 473 PXXKNPXPPPPXXFFXXXKPPPPPPXXXKKKK 378
           P    P PPPP  F    +PPPPPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 36.7 bits (81), Expect = 0.007
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 461 NPXPPPPXXFFXXXK--PPPPPPXXXKKKK 378
           NP PPPP   F      PPPPPP   KK+K
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = -1

Query: 563 PXXPPXGXKXPXP-PRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
           P  PP     P P P   P        GG       P PPPP        PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGP------PPPPPPPGVAGAGPPPPPPP 781


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 416  PPPPPPXXXKKKKXLFFXXXFFS 348
            PPPPPP    +KK L+     F+
Sbjct: 1096 PPPPPPPAEVEKKDLYLALYDFA 1118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.142    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,511
Number of Sequences: 5004
Number of extensions: 25482
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)