Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_A02
(1223 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 39 0.006
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 39 0.006
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.011
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.011
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.011
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 38 0.019
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 38 0.019
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 37 0.033
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 34 0.18
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 34 0.24
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 34 0.24
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 34 0.24
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 33 0.31
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 33 0.31
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 32 0.72
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 32 0.72
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 32 0.72
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 32 0.95
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 32 0.95
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 32 0.95
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 32 0.95
Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 31 1.3
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 31 1.3
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 31 1.7
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 31 1.7
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 31 1.7
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 31 1.7
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 31 1.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.7
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.7
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.7
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 31 2.2
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 31 2.2
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 31 2.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 2.2
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 31 2.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 2.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 2.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 2.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.9
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.9
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical p... 29 5.1
Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical p... 29 5.1
Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical pr... 29 5.1
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 29 5.1
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 5.1
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 5.1
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 29 5.1
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 5.1
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 5.1
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 5.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 5.1
Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical pr... 29 6.7
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 6.7
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 6.7
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 6.7
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 29 6.7
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 25 8.2
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 29 8.8
Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 8.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 8.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 8.8
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 8.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 8.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 8.8
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 8.8
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 8.8
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 8.8
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 8.8
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 8.8
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 8.8
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 8.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 39.1 bits (87), Expect = 0.006
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKN--PXPPPPXXFFXXXKPPPPPP 399
P PP + P PP G P GP P PPPP + PPPPPP
Sbjct: 298 PPPPPPPGRTPGPP-GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
Score = 34.7 bits (76), Expect = 0.13
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXF---FXXXKPP 411
P P PP P PP P G G P P PPPP F PP
Sbjct: 281 PGMTPRPPPPPSSGMWPPPP---PPPPGRTPGPPGMPGM--PPPPPPSRFGPPGMGGMPP 335
Query: 410 PPPP 399
PPPP
Sbjct: 336 PPPP 339
Score = 32.3 bits (70), Expect = 0.72
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P P PP G + P P G G P PP P PPPPP
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 39.1 bits (87), Expect = 0.006
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKN--PXPPPPXXFFXXXKPPPPPP 399
P PP + P PP G P GP P PPPP + PPPPPP
Sbjct: 308 PPPPPPPGRTPGPP-GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 363
Score = 34.7 bits (76), Expect = 0.13
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXF---FXXXKPP 411
P P PP P PP P G G P P PPPP F PP
Sbjct: 291 PGMTPRPPPPPSSGMWPPPP---PPPPGRTPGPPGMPGM--PPPPPPSRFGPPGMGGMPP 345
Query: 410 PPPP 399
PPPP
Sbjct: 346 PPPP 349
Score = 32.3 bits (70), Expect = 0.72
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P P PP G + P P G G P PP P PPPPP
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 38.3 bits (85), Expect = 0.011
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Frame = -1
Query: 563 PXXPPX--GXKXPXPPRGXPXXXXFXXG----GGGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P PP G P PP G P GG P P PPPP PPPPP
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 401 PXXXK 387
P K
Sbjct: 777 PGGFK 781
Score = 36.3 bits (80), Expect = 0.044
Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPX---PPRGXPXXXXFXXGGGGGPXXKNPX------PPPPXXFF 429
P P PP G P PP P GG P P PPPP F
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Query: 428 XXXKPPPPPP 399
PPPPPP
Sbjct: 781 KGGPPPPPPP 790
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Frame = -1
Query: 539 KXPXPPRGXPXXXXFXXGGGGG----PXXKNPXPPPPXXFFXXXKPPPPPP 399
K P PP GG P P PPP PPPPPP
Sbjct: 682 KIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPP 732
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 38.3 bits (85), Expect = 0.011
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Frame = -1
Query: 563 PXXPPX--GXKXPXPPRGXPXXXXFXXG----GGGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P PP G P PP G P GG P P PPPP PPPPP
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 401 PXXXK 387
P K
Sbjct: 777 PGGFK 781
Score = 36.3 bits (80), Expect = 0.044
Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPX---PPRGXPXXXXFXXGGGGGPXXKNPX------PPPPXXFF 429
P P PP G P PP P GG P P PPPP F
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Query: 428 XXXKPPPPPP 399
PPPPPP
Sbjct: 781 KGGPPPPPPP 790
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Frame = -1
Query: 539 KXPXPPRGXPXXXXFXXGGGGG----PXXKNPXPPPPXXFFXXXKPPPPPP 399
K P PP GG P P PPP PPPPPP
Sbjct: 682 KIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPP 732
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 38.3 bits (85), Expect = 0.011
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Frame = -1
Query: 563 PXXPPX--GXKXPXPPRGXPXXXXFXXG----GGGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P PP G P PP G P GG P P PPPP PPPPP
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Query: 401 PXXXK 387
P K
Sbjct: 360 PGGFK 364
Score = 36.3 bits (80), Expect = 0.044
Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPX---PPRGXPXXXXFXXGGGGGPXXKNPX------PPPPXXFF 429
P P PP G P PP P GG P P PPPP F
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 363
Query: 428 XXXKPPPPPP 399
PPPPPP
Sbjct: 364 KGGPPPPPPP 373
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Frame = -1
Query: 539 KXPXPPRGXPXXXXFXXGGGGG----PXXKNPXPPPPXXFFXXXKPPPPPP 399
K P PP GG P P PPP PPPPPP
Sbjct: 265 KIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPP 315
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 37.5 bits (83), Expect = 0.019
Identities = 20/48 (41%), Positives = 20/48 (41%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXGG 583
GGGG G PPPPP G GGG GG GG GG
Sbjct: 100 GGGGGCG-GGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGG 146
Score = 35.5 bits (78), Expect = 0.077
Identities = 19/48 (39%), Positives = 19/48 (39%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXGG 583
GGGG G PPPPP G GG GG GG GG
Sbjct: 43 GGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGGGG 90
Score = 33.1 bits (72), Expect = 0.41
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
GGGGGG GGGG PPPPP
Sbjct: 86 GGGGGGCGGGGGGCGGGGGCGGGCAPPPPPP 116
Score = 32.3 bits (70), Expect = 0.72
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +3
Query: 381 FFFXXXGGGGGGFXXXKKXXGGGGXX----VFXXXAPPPPP 491
F F GGGGGG GGGG APPPPP
Sbjct: 18 FLFPSGGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPP 58
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = +2
Query: 440 GGGGXXGFXXXG---PPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXGG 583
GGGG G G PPPP G GGG GG GG GG
Sbjct: 38 GGGGCGGGGGCGGGCAPPPP-PPACGGGCGGGGGGCGGGGGGCGGGGGCGG 87
Score = 29.1 bits (62), Expect = 6.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
GGG GG GGGG PPPPP
Sbjct: 29 GGGCGGGCGGGGGCGGGGGCGGGCAPPPPPP 59
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 37.5 bits (83), Expect = 0.019
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P F P P P P G P GG P PPP F PPPPP
Sbjct: 61 PSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 36.7 bits (81), Expect = 0.033
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFF-XXXKPPPPPPXXXK 387
P PP P PP P G P P PPPP F PPPPPP +
Sbjct: 1344 PPPPPSDDLTPVPPP-PPPPPTMSKAPTGVPL---PVPPPPPLFSPSMILPPPPPPLPSE 1399
Query: 386 KKK 378
+KK
Sbjct: 1400 EKK 1402
Score = 32.7 bits (71), Expect = 0.54
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 473 PXXKNPXPPPPXXFFXXXKPPPPPPXXXKK 384
P P PPPP PPPPPP K
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSK 1367
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPPXXXKKK 381
P PPPP PPPPPP K
Sbjct: 1342 PPPPPPPSDDLTPVPPPPPPPPTMSK 1367
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 34.3 bits (75), Expect = 0.18
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = -1
Query: 554 PPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
PP P PP P G P P PP P PPPPPP
Sbjct: 535 PPPVSSIPPPP---PIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPP 583
Score = 33.1 bits (72), Expect = 0.41
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -1
Query: 545 GXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
G P PP P G P P PPPP PPPPPP
Sbjct: 555 GTNVPIPP---PPPPPLPQNLSGAP----PPPPPPPPMLGGPPPPPPPP 596
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 33.9 bits (74), Expect = 0.24
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
GGGGGG GGG APPPPP
Sbjct: 276 GGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
Score = 33.5 bits (73), Expect = 0.31
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGP-PGGGXXXSPXKGGXGGXXKXGG 583
GGGG PPPPP P GG GG GG GG
Sbjct: 291 GGGGYSAPAAAPPPPPPPPPPPAPAPVSSGGGYSEQSSGGGGGSSYSGG 339
Score = 32.3 bits (70), Expect = 0.72
Identities = 19/48 (39%), Positives = 19/48 (39%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXGG 583
GGGG G PPP P G GGG GG GG GG
Sbjct: 62 GGGGCGGGGGCAPPPAP----CGGGCGGGGGGCGGGGGGCGGGGGCGG 105
Score = 31.9 bits (69), Expect = 0.95
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
GGGGG GGGG PPPPP
Sbjct: 277 GGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 381 FFFXXXGGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
F F GGGGGG GG G APPP P
Sbjct: 20 FLFPSAGGGGGGGGCGGGCGGGCGGG--GGCAPPPAP 54
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +2
Query: 443 GGGXXGFXXXGPPPPPXKXXXXXGPPG--GGXXXSPXKGGXGGXXKXGG 583
GGG G PPP P G G GG +P GG GG
Sbjct: 39 GGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGG 87
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 33.9 bits (74), Expect = 0.24
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
GGGGGG GGG APPPPP
Sbjct: 276 GGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
Score = 33.5 bits (73), Expect = 0.31
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGP-PGGGXXXSPXKGGXGGXXKXGG 583
GGGG PPPPP P GG GG GG GG
Sbjct: 291 GGGGYSAPAAAPPPPPPPPPPPAPAPVSSGGGYSEQSSGGGGGSSYSGG 339
Score = 32.3 bits (70), Expect = 0.72
Identities = 19/48 (39%), Positives = 19/48 (39%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXGG 583
GGGG G PPP P G GGG GG GG GG
Sbjct: 62 GGGGCGGGGGCAPPPAP----CGGGCGGGGGGCGGGGGGCGGGGGCGG 105
Score = 31.9 bits (69), Expect = 0.95
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
GGGGG GGGG PPPPP
Sbjct: 277 GGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 381 FFFXXXGGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
F F GGGGGG GG G APPP P
Sbjct: 20 FLFPSAGGGGGGGGCGGGCGGGCGGG--GGCAPPPAP 54
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +2
Query: 443 GGGXXGFXXXGPPPPPXKXXXXXGPPG--GGXXXSPXKGGXGGXXKXGG 583
GGG G PPP P G G GG +P GG GG
Sbjct: 39 GGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGG 87
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 33.9 bits (74), Expect = 0.24
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -1
Query: 488 GGGGGPXXKNPX--PPPPXXFFXXXKPPPPPP 399
GGGGG P PPPP PPPPPP
Sbjct: 27 GGGGGCAPAAPACAPPPPPMCGCAPPPPPPPP 58
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +3
Query: 381 FFFXXXGGGGGGFXXXKKXXGGGGXXVFXXXAPPPPPXKXXXXXXPP 521
F F GGGGGG GG APPPPP PP
Sbjct: 18 FLFPMAGGGGGG---------GGCAPAAPACAPPPPPMCGCAPPPPP 55
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 33.5 bits (73), Expect = 0.31
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 488 GGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
G GGG P PPP PPPPPP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 33.5 bits (73), Expect = 0.31
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 488 GGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
G GGG P PPP PPPPPP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 32.3 bits (70), Expect = 0.72
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
P PP G PP P G G PPPP PPPPPP
Sbjct: 539 PPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPP--------PPPPPP 585
Score = 28.7 bits (61), Expect = 8.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPP 402
P PPPP PPPPP
Sbjct: 538 PPPPPPVGMANGGPPPPPP 556
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 32.3 bits (70), Expect = 0.72
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPPXK 497
GG GGG + GGGG APP PP K
Sbjct: 619 GGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAK 651
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 32.3 bits (70), Expect = 0.72
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPPXK 497
GG GGG + GGGG APP PP K
Sbjct: 619 GGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAK 651
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 31.9 bits (69), Expect = 0.95
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPPXXXKKK 381
P PPPP KP PPPP ++K
Sbjct: 157 PPPPPPPVSVPSSKPTPPPPPPAQQK 182
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 31.9 bits (69), Expect = 0.95
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPPXXXKKK 381
P PPPP KP PPPP ++K
Sbjct: 157 PPPPPPPVSVPSSKPTPPPPPPAQQK 182
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 31.9 bits (69), Expect = 0.95
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 485 GGGGPXXKNPXPPPPXXFFXXXKPPP 408
G GGP P PPPP FF PPP
Sbjct: 1008 GPGGPPP--PPPPPPADFFANIAPPP 1031
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 31.9 bits (69), Expect = 0.95
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 485 GGGGPXXKNPXPPPPXXFFXXXKPPP 408
G GGP P PPPP FF PPP
Sbjct: 247 GPGGPPP--PPPPPPADFFANIAPPP 270
>Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical
protein F46B3.5 protein.
Length = 946
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -3
Query: 651 PXXPFFFFXXFXXXFXXXFXXXXPPFFXXPPXPPXXGEXXXPPPGGPXXXXXFXGGGGG 475
P P F F F P F P P PPP P GGGGG
Sbjct: 682 PPQPPVFVQQFVAPQFVQFVAPQPQFVAVAPQPQFVAVAPVPPPVAPAVAFAGGGGGGG 740
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 31.5 bits (68), Expect = 1.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPP 399
P PPPP PPPPPP
Sbjct: 70 PPPPPPLISILQQAPPPPPP 89
Score = 29.1 bits (62), Expect = 6.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPP 399
P PPPP + PPPPP
Sbjct: 69 PPPPPPPLISILQQAPPPPP 88
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 443 GGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXGG 583
GGG G PPPP P GG +P GG + GG
Sbjct: 22 GGGGGGCCAPPPPPPCGGGCGGGAPAAGGYAVAPQAPIGGGYAQPGG 68
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +2
Query: 437 PGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXG 562
PG G G GPPP P GPPG P KG G
Sbjct: 134 PGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGP-KGLPG 174
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 31.1 bits (67), Expect = 1.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPPXXXKKKKXLFF 366
P PPPP +PPPPP +++ F+
Sbjct: 148 PRPPPPVELSPPPRPPPPPEYDEEEETRAFW 178
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 31.1 bits (67), Expect = 1.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPPXXXKKKKXLFF 366
P PPPP +PPPPP +++ F+
Sbjct: 789 PRPPPPVELSPPPRPPPPPEYDEEEETRAFW 819
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 31.1 bits (67), Expect = 1.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPPXXXKKKKXLFF 366
P PPPP +PPPPP +++ F+
Sbjct: 789 PRPPPPVELSPPPRPPPPPEYDEEEETRAFW 819
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 31.1 bits (67), Expect = 1.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPPXXXKKKKXLFF 366
P PPPP +PPPPP +++ F+
Sbjct: 789 PRPPPPVELSPPPRPPPPPEYDEEEETRAFW 819
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -3
Query: 582 PPFFXXPPXPPXXGEXXXPPPGGPXXXXXFXGGGGGP 472
P F P P G PPPGGP + GGP
Sbjct: 394 PSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGP 430
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = -1
Query: 554 PPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPP--PPP 399
PP P P P G P + PPPP F PPP PPP
Sbjct: 271 PPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPP 324
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = -1
Query: 554 PPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPP--PPP 399
PP P P P G P + PPPP F PPP PPP
Sbjct: 271 PPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPP 324
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 488 GGGGGPXXKNPXPPPPXXFFXXXKPPPPP 402
GGGGG P PPPP P P P
Sbjct: 31 GGGGGGGDAAPPPPPPADAAPAPAPAPEP 59
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 473 PXXKNPXPPPPXXFFXXXKPPPPPPXXXKKK 381
P NP PPPP PPPPP KKK
Sbjct: 812 PIASNPPPPPPL--------PPPPPSVEKKK 834
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 30.7 bits (66), Expect = 2.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPP 399
P PPPP PPPPPP
Sbjct: 794 PPPPPPLPPISSGAPPPPPP 813
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 30.7 bits (66), Expect = 2.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPP 399
P PPPP PPPPPP
Sbjct: 794 PPPPPPLPPISSGAPPPPPP 813
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +2
Query: 473 GPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXGG 583
GPPP GPP GG P GG GG GG
Sbjct: 153 GPPPLMGGGGDPRGPP-GGMGGPPGHGGMGGPPGHGG 188
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGPPG-GGXXXSPXKGGXGG 565
GGGG G PP GPPG GG P GG GG
Sbjct: 159 GGGGDPRGPPGGMGGPPGHGGMG-GPPGHGGQGGPPGHGGMGG 200
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +2
Query: 473 GPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXGG 583
GPPP GPP GG P GG GG GG
Sbjct: 433 GPPPLMGGGGDPRGPP-GGMGGPPGHGGMGGPPGHGG 468
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGPPG-GGXXXSPXKGGXGG 565
GGGG G PP GPPG GG P GG GG
Sbjct: 439 GGGGDPRGPPGGMGGPPGHGGMG-GPPGHGGQGGPPGHGGMGG 480
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 473 PXXKNPXPPPPXXFFXXXKPPPPPPXXXKKK 381
P NP PPPP PPPPP KKK
Sbjct: 812 PIASNPPPPPPL--------PPPPPSVEKKK 834
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Frame = -1
Query: 554 PPXGXKXPXPP-RGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKP---PPPPP 399
PP G P PP +G P G P PPPP P PPPPP
Sbjct: 232 PPAGSPPPPPPPKGSPP---LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGG---GGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P PP G P P G P G G P + PPP PPPPP
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA---GTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Frame = -1
Query: 554 PPXGXKXPXPP-RGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKP---PPPPP 399
PP G P PP +G P G P PPPP P PPPPP
Sbjct: 253 PPAGSPPPPPPPKGSPP---LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGG---GGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P PP G P P G P G G P + PPP PPPPP
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA---GTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Frame = -1
Query: 554 PPXGXKXPXPP-RGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKP---PPPPP 399
PP G P PP +G P G P PPPP P PPPPP
Sbjct: 238 PPAGSPPPPPPPKGSPP---LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGG---GGGPXXKNPXPPPPXXFFXXXKPPPPP 402
P PP G P P G P G G P + PPP PPPPP
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA---GTGSPPPPP 339
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -1
Query: 473 PXXKNPXPPPPXXFFXXXKP--PPPPP 399
P + P PPPP + P PPPPP
Sbjct: 127 PYQQQPPPPPPPPHYPPPPPHYPPPPP 153
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +2
Query: 437 PGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGG 565
PG G G GPP PP P G G P + G G
Sbjct: 263 PGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGPG 305
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.9 bits (64), Expect = 3.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPP 399
P PPPP PPPPPP
Sbjct: 40 PPPPPPPCGGGYEAPPPPPP 59
Score = 29.9 bits (64), Expect = 3.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 458 PXPPPPXXFFXXXKPPPPPP 399
P PPPP PPPPPP
Sbjct: 41 PPPPPPCGGGYEAPPPPPPP 60
>Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = +2
Query: 431 KXPGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGG 565
K GG G G GPPPPP P GG + GG GG
Sbjct: 204 KNAGGNGPSG--PDGPPPPPSN------PYGGSGNDNGSSGGGGG 240
>Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = +2
Query: 431 KXPGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGG 565
K GG G G GPPPPP P GG + GG GG
Sbjct: 204 KNAGGNGPSG--PDGPPPPPSN------PYGGSGNDNGSSGGGGG 240
>Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = +2
Query: 431 KXPGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGG 565
K GG G G GPPPPP P GG + GG GG
Sbjct: 204 KNAGGNGPSG--PDGPPPPPSN------PYGGSGNDNGSSGGGGG 240
>Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = +2
Query: 431 KXPGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGG 565
K GG G G GPPPPP P GG + GG GG
Sbjct: 204 KNAGGNGPSG--PDGPPPPPSN------PYGGSGNDNGSSGGGGG 240
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +2
Query: 428 KKXPGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXG 580
K PG G GPP PP GPPG S G G + G
Sbjct: 200 KGPPGDDSIGGTGIKGPPGPPGPRGPK-GPPGSNGLPSQNSGPPGPIGEMG 249
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -1
Query: 533 PXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
P PP P P P PP PPPPPP
Sbjct: 610 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 654
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -1
Query: 533 PXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
P PP P P P PP PPPPPP
Sbjct: 436 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 480
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +2
Query: 428 KKXPGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXGGXXKXG 580
K PG G GPP PP GPPG S G G + G
Sbjct: 200 KGPPGDDSIGGTGIKGPPGPPGPRGPK-GPPGSNGLPSQNSGPPGPIGEMG 249
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +2
Query: 437 PGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKG 553
PGGG GPPPPP GPP G P G
Sbjct: 674 PGGG-------QGPPPPPQGQQYYGGPPPPGQPYGPPGG 705
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +2
Query: 437 PGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKG 553
PGGG GPPPPP GPP G P G
Sbjct: 674 PGGG-------QGPPPPPQGQQYYGGPPPPGQPYGPPGG 705
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -1
Query: 527 PPR--GXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPP 402
PP+ G P GGG GP PPPP PPPPP
Sbjct: 29 PPQCCGPPPACGNPCGGGFGP------PPPPFGPVGYALPPPPP 66
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 5.1
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = -1
Query: 581 PXFXXXPXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXF---FXXXKPP 411
P P PP P PP+G P P +P PPP F F PP
Sbjct: 710 PGIPGYPPAPPPPGVGPPPPQGIP------------PMGFDPNKPPPPMFQQGFNAGAPP 757
Query: 410 PP 405
PP
Sbjct: 758 PP 759
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPP 405
P PP PP G P G GP PP F KPPPP
Sbjct: 696 PGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPP---MGFDPNKPPPP 745
>Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical
protein ZC376.8 protein.
Length = 278
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 479 GGPXXKNPXPPPPXXFFXXXKPPPPPPXXXKK 384
G P ++P PPPP PPP KK
Sbjct: 45 GAPSAESPPPPPPAPKVPEPPKAPPPADAVKK 76
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXV-----FXXXAPPPP 488
GGGGGGF GGGG F AP PP
Sbjct: 483 GGGGGGFGGGGGGFGGGGGGFGSGSPFGGAAPSPP 517
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.1 bits (62), Expect = 6.7
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -1
Query: 479 GGPXXKNPXPPPPXXFF-XXXKPPPPPP 399
G P P PPPP KP PPPP
Sbjct: 67 GRPTESPPLPPPPLPLSNPPAKPTPPPP 94
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.1 bits (62), Expect = 6.7
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -1
Query: 479 GGPXXKNPXPPPPXXFF-XXXKPPPPPP 399
G P P PPPP KP PPPP
Sbjct: 289 GRPTESPPLPPPPLPLSNPPAKPTPPPP 316
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 29.1 bits (62), Expect = 6.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 452 PPPPXXFFXXXKPPPPPP 399
PPPP PPPPPP
Sbjct: 2279 PPPPGYMHTPPLPPPPPP 2296
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 25.4 bits (53), Expect(2) = 8.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 497 FXXGGGGGPXXKNPXPPPP 441
+ GG G P P PPPP
Sbjct: 21 YYGGGKGRPPPARPPPPPP 39
Score = 21.8 bits (44), Expect(2) = 8.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 416 PPPPPPXXXK 387
PPPPPP K
Sbjct: 35 PPPPPPRGVK 44
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 582 PPFFXXPPXPPXXGEXXXPPPGGPXXXXXFXGGGG 478
PP P PP G PPPG GGGG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 582 PPFFXXPPXPPXXGEXXXPPPGGPXXXXXFXGGGG 478
PP P PP G PPPG GGGG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
GGGGGG + GG V APPPPP
Sbjct: 15 GGGGGGGGGGGEAGYSGGAGV---EAPPPPP 42
>Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical protein
F28D1.8 protein.
Length = 360
Score = 28.7 bits (61), Expect = 8.8
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +2
Query: 1025 KKKKXXXXGGXKKXKKGXXXXXXKKKKXXXXXPXXKKKXKKKXXXXXXKK 1174
KKKK GG KK KK K KK KKK KK
Sbjct: 309 KKKKKTKKGGKKKKSGAGKGKGKKKSKVSKEKKGGKKVQKKKPASKPTKK 358
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPP---PXKXXXXXGPPGGGXXXSPXKG 553
GGGG G GPP P P K P G +P KG
Sbjct: 94 GGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKG 134
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSPXKGGXG 562
GGGG G GPP P + P G +P G G
Sbjct: 109 GGGGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASGKG 149
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPP---PXKXXXXXGPPGGGXXXSPXKG 553
GGGG G GPP P P K P G +P KG
Sbjct: 94 GGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKG 134
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 8.8
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -1
Query: 563 PXXPPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPPPXXFFXXXKPPPPPP 399
P PP PP P P P PPPP PPPPPP
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP---PPMCPPPPPP 80
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 582 PPFFXXPPXPPXXGEXXXPPPGGPXXXXXFXGGGG 478
PP P PP G PPPG GGGG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPP---PXKXXXXXGPPGGGXXXSPXKG 553
GGGG G GPP P P K P G +P KG
Sbjct: 94 GGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKG 134
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +2
Query: 440 GGGGXXGFXXXGPPPP---PXKXXXXXGPPGGGXXXSPXKG 553
GGGG G GPP P P K P G +P KG
Sbjct: 94 GGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKG 134
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -1
Query: 554 PPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPP 444
PP G P G P G G P P PPP
Sbjct: 220 PPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 256
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 582 PPFFXXPPXPPXXGEXXXPPPGGPXXXXXFXGGGG 478
PP P PP G PPPG GGGG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = -1
Query: 482 GGGPXXKNPXP---PPPXXFFXXXKPPPPPP 399
GG P NP PPP PPPPPP
Sbjct: 120 GGVPAPPNPPRTCCPPPTPAAPPPPPPPPPP 150
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -1
Query: 554 PPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPP 444
PP G P G P G G P P PPP
Sbjct: 206 PPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -1
Query: 554 PPXGXKXPXPPRGXPXXXXFXXGGGGGPXXKNPXPPP 444
PP G P G P G G P P PPP
Sbjct: 206 PPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 242
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 437 PGGGGXXGFXXXGPPPPPXKXXXXXGPPGGGXXXSP 544
P GG G G PPPP P GG P
Sbjct: 20 PSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPP 55
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 399 GGGGGGFXXXKKXXGGGGXXVFXXXAPPPPP 491
GGGGGG G GG PPPPP
Sbjct: 189 GGGGGGMGGGGGSGGSGGGS--GRFPPPPPP 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.309 0.142 0.440
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,204,175
Number of Sequences: 27780
Number of extensions: 292867
Number of successful extensions: 2289
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3380764392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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