Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P23
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    28   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.0  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    26   6.2  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   6.2  

>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 438 CKYLSSINICRSLQIQQPTDRLIIKTIDVYSSLK*IRSKFNQILRSS 578
           C Y  S+++C S  +  P   +I+   D  +  K  R  +   LR S
Sbjct: 214 CSYFDSVSLCLSKGLAAPVGSIIVGPRDFIAKAKWFRKAYGGGLRQS 260


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 121 TKYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLTFHCTL 258
           TK+    S DW  +  Q   + Y +  L+   K L YL L ++C L
Sbjct: 502 TKFFQSTSIDWVEAGLQVCRQGYNMLQLLIHRKGLTYLHLDYNCNL 547


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 685 RLTYSVNVCIYSIHSILSVNIIFLICTFS*FSNKLNE 575
           ++T      IY +H  +  +I F + T S FSN+LNE
Sbjct: 133 KITEITGAKIYIMHRSMCHDIDFQLRTDSGFSNRLNE 169


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 124 KYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLTFHC 252
           KY+ + S         +LWK+  I   I   K+L+  + +FHC
Sbjct: 470 KYLAEFSASLELDPNLALWKKQVIFSKIGHPKLLVMPISSFHC 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,989
Number of Sequences: 5004
Number of extensions: 66579
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)