Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P22
         (888 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   2.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   5.6  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   5.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   5.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   7.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.8  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 562 YAEERARQETSGRWNEG 612
           YA++R  Q+TSG  ++G
Sbjct: 606 YADDRVEQDTSGTCSDG 622


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +1

Query: 592 SGRWNEGAPPYE--HFLCCLCGWTVQCYCQPYRRTKSADADGRGEAQPGALLPG 747
           SG ++  A P +   +  CL G   +  C      K  DADG G  +    +PG
Sbjct: 166 SGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDADGTGNCEDPEDVPG 219


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +1

Query: 592 SGRWNEGAPPYE--HFLCCLCGWTVQCYCQPYRRTKSADADGRGEAQPGALLPG 747
           SG ++  A P +   +  CL G   +  C      K  DADG G  +    +PG
Sbjct: 166 SGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDADGTGNCEDPEDVPG 219


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 355 HSLSIQPKLVFKSKXQKIDPRSC*TTVYWDGGLHHQNFQARGCQGF 492
           H + I+P+    S   +I    C     +  G H+  F   GC GF
Sbjct: 18  HRMQIKPQS--PSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGF 61


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 355 HSLSIQPKLVFKSKXQKIDPRSC*TTVYWDGGLHHQNFQARGCQGF 492
           H + I+P+    S   +I    C     +  G H+  F   GC GF
Sbjct: 18  HRMQIKPQS--PSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGF 61


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 234 KAQPVLNNIKL*HCISRVMGERN 302
           KA   L  +KL HC S V G RN
Sbjct: 236 KAMSDLMIVKLSHCNSYVDGGRN 258


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 578 LAKRRADGGTKEHLPTNTFCAAFAGGLSSAIAN 676
           L KR+     K+H+  N F  A+ G L + + +
Sbjct: 80  LIKRKDSPVQKKHILKNVFGVAYPGELLAILGS 112


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 578 LAKRRADGGTKEHLPTNTFCAAFAGGLSSAIAN 676
           L KR+     K+H+  N F  A+ G L + + +
Sbjct: 80  LIKRKDSPVQKKHILKNVFGVAYPGELLAILGS 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,864
Number of Sequences: 336
Number of extensions: 4292
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)