Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P21
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.38 
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   4.7  

>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 259 NTPATPPNF-PDALAAFSRLSTTGSPNNAGGVCMNTAPPVS 378
           ++P  PP+F  DA+++FS L T  S NN GG   +TAP V+
Sbjct: 428 DSPRVPPSFSDDAVSSFS-LVTAPSINNVGG---STAPSVN 464


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 622 TLLQRLLAXHYXGYWTXXXHVKNILKVLSVYVQLYE*C 735
           TLL +LL+ +     +    VKNI K  S+ V LY+ C
Sbjct: 58  TLLDKLLSKYVPNLASYLLKVKNIGKCNSITVILYQFC 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,943
Number of Sequences: 5004
Number of extensions: 58752
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)