Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P20
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    28   2.1  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.6  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   6.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   6.3  

>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 151 NAFNNGPREELLYVVCVRPNKNKQDYLATVDVDSK--SATYGQ 273
           N+F+  P  E L  V  +P+  + DYL  +D D +  S TY Q
Sbjct: 31  NSFSASPALERLQDVFSKPSVQEYDYLVPLDEDMQGLSTTYHQ 73


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 265 YGQVIHR-TYTGVTGDELHHSGWNVCSSCHDN 357
           Y   IH+ TY+GV   E   +G+ +   CHDN
Sbjct: 2   YNDQIHKITYSGVEVFEYTINGFPLMKRCHDN 33


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 375 VSLQCRVVMATRTHIPAAVMQFVSCYSRVGAVNDLAVCCGFR 250
           +S+Q R  +    H PAA++ F+SC S +  +  L +    R
Sbjct: 359 LSVQLRWFITYIFHPPAAMILFISCTSFISGILQLVLLNNIR 400


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 307 DELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVD 423
           DEL+H  WN     H N   +   L++   +    Y  D
Sbjct: 473 DELYHGEWNTVPGHHKNPKCRAKKLVVESRNGRREYVQD 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,835
Number of Sequences: 5004
Number of extensions: 53033
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)