Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P20
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023835-5|CAA19490.1|  471|Caenorhabditis elegans Hypothetical ...   133   1e-31
Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    46   4e-05

>AL023835-5|CAA19490.1|  471|Caenorhabditis elegans Hypothetical
           protein Y37A1B.5 protein.
          Length = 471

 Score =  133 bits (322), Expect = 1e-31
 Identities = 69/139 (49%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
 Frame = +1

Query: 166 GPREELLYVVCVRPNK-NKQDYLATVDVDSKSATYGQVIHRTYTGVTGDELHHSGWNVCS 342
           GPREE+L+V    PN  +  D + TVDV+ +S T+ QVI R      GDE+HH+GWN CS
Sbjct: 24  GPREEVLFVTA--PNAADGPDAIFTVDVNPESDTFCQVISRVDVPHIGDEVHHTGWNACS 81

Query: 343 SCHDNAALKRDLLIMPGLHSCNVYAVDVGTDPRKPRLHKVIDGSKMRSFNCSFPHTTHCL 522
           SCHD    KR  LI+P L+S  +Y ++V  + RK  L   I+ SK+ S N SFPHT+HCL
Sbjct: 82  SCHDKPTEKRSHLIVPCLNSDRIYIINVENE-RKIYLEHTIEPSKLHSLNLSFPHTSHCL 140

Query: 523 AXGEIMISTMGDENENGXG 579
           A G IMIST+G+ N    G
Sbjct: 141 ADGNIMISTLGEANGTPSG 159


>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
 Frame = +1

Query: 175 EELLYVVCVRPNKN-KQDYLATVDVDSKSATYGQVIHRTYTGVTGDELHHSGW-NVCSSC 348
           +EL  +VC   +   ++D +A VD+D  S T+  ++   +    GDE     W     S 
Sbjct: 89  DELFAIVCCPHSIGYERDKIALVDLDPTSETFCTILSEVHLTSNGDEPGRMNWAKSAESL 148

Query: 349 HDNAALKRDLLIMPGLHSCNVYAVDVGTDPRKPRLHKVIDGSKM--RSFNCSFPHTTHCL 522
            +     R  +I+P ++S  +Y   +  +  K  + K I   ++  +  +C +   +  L
Sbjct: 149 GEMNKFVRRNIIVPCMNSGKIYV--IAFENEKLWIEKEIRNDELIRKDVSCPYAVRSLPL 206

Query: 523 AXGEIMISTMGDENENGXGILCSSTRXLWK 612
               + +ST+GD   NG G      R  W+
Sbjct: 207 KGAPVHVSTLGDRFGNGKGDFILIDRRTWE 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,894,687
Number of Sequences: 27780
Number of extensions: 311114
Number of successful extensions: 740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)