Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P16
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.75 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 557 PXXPGXGGFFFXXKPTPXPPPPXXXKKKKKNP 462
           P  P   GF    +P P PPP    K+K K P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 24/83 (28%), Positives = 25/83 (30%)
 Frame = +3

Query: 510 GXFXXKKKXPPPXGXGGFXFFXXXQXXXKKKKGGKXXXXGXXGXXPXKKGGXXGXPKGXG 689
           G F      PPP G GGF  F           GG+    G  G      GG  G P G G
Sbjct: 191 GGFGGGSGGPPP-GPGGFGGFGGF--------GGEGHHHGGHGGFGGGPGGFEGGPGGFG 241

Query: 690 XXKKGXXXXXXXXXXXPXXXKGG 758
               G           P    GG
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,528
Number of Sequences: 5004
Number of extensions: 15150
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)