Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P15
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...   354   8e-99
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    42   2e-04
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   3.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.5  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   8.1  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   8.1  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score =  354 bits (871), Expect = 8e-99
 Identities = 168/211 (79%), Positives = 185/211 (87%)
 Frame = +3

Query: 48   EEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKN 227
            EE LM  LGVVLYEYLGEEYPEVLGSILGA+KAIV+V+GM+ M PPI+DLLPRLTPIL+N
Sbjct: 851  EEALMRKLGVVLYEYLGEEYPEVLGSILGAIKAIVSVVGMSSMQPPIRDLLPRLTPILRN 910

Query: 228  RHEKVQENCIDLVGRIADRGPEFVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAK 407
            RHEKVQEN IDLVG+IADRG E+VSAREWMRICF      KAHKK+IRRA VNTFGYI+K
Sbjct: 911  RHEKVQENTIDLVGKIADRGSEYVSAREWMRICFELIDMLKAHKKSIRRAAVNTFGYISK 970

Query: 408  AIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELXVQNG 587
            AIGP DVLATLLNNLKVQERQNRVCTTVAIAIVAETC PFTV+PALM +YR PE+ VQNG
Sbjct: 971  AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCMPFTVVPALMADYRTPEMNVQNG 1030

Query: 588  VLKSLSFLFEYIGEMGXDYIYAVXPLLXTRL 680
            VLKSL+F+FEYIGE   DY+YA+ PLL   L
Sbjct: 1031 VLKSLAFMFEYIGEQARDYVYAITPLLADAL 1061



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 659  PIIXNALMDRDLXHXQXLALP*NHVA 736
            P++ +ALMDRD  H Q  A    H++
Sbjct: 1055 PLLADALMDRDAVHRQTAASVIKHLS 1080


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 11/220 (5%)
 Frame = +3

Query: 42  LEEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL 221
           L +EK   +L  +  E L +E PEV  +I+  L+ +  V+G+  ++   + LLP +  + 
Sbjct: 354 LGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLS---QSLLPAIVTLA 410

Query: 222 KNRHEKVQENCIDLVGRIADR-GPEFVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGY 398
           +++  +V+   ID +  +A + G EF +  +   +C       + H  +IR A +     
Sbjct: 411 EDKQWRVRLAIIDYIPLLAQQLGVEFFN-EKMGNLCM---SWLEDHVYSIREAAIKNLRK 466

Query: 399 IAKAIGPHDVLATLLNN-LKVQERQN---RVCTTVAIAIVAETCSPFT----VLPALMNE 554
           + +  G      T++   L ++   N   R+ T  AI+ +A   +       +LP L   
Sbjct: 467 LTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTLEQL 526

Query: 555 YRVPELXVQNGVLKSLSFLFEYIGEMGXDYIY--AVXPLL 668
              P   ++  V K+   L   +   G   +Y   + PLL
Sbjct: 527 VNDPIPNIRFNVAKAFEVLKPVLAAGGDSTVYEQQIIPLL 566


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 281
           + P + D+L RL  +L++    VQE  +  +  +AD
Sbjct: 490 LEPYLDDILQRLLTLLQSPKRYVQEQAVTTIATVAD 525


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 30   NP*DLEEEKLMGHLGVVLYEYLGEEYPE 113
            NP D+ E+K++     V YE+  E +PE
Sbjct: 2174 NPGDIFEKKILPKFPPVFYEWFVESFPE 2201


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 134 CIKSNCQCYWNDKDDPTNKGSPA*TYTHFEKQ 229
           C+KSN QC++   +DP  + +P       E+Q
Sbjct: 38  CVKSNSQCFY--PEDPIRRRAPKEYVEALERQ 67


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 81  LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIK 191
           LY  + EE+P    S+L  +  I NV+ + +  P IK
Sbjct: 194 LYSSILEEFPYKDESLLAQMTYISNVLSICEYVPSIK 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,609
Number of Sequences: 5004
Number of extensions: 62974
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)