Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P15
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...   385   e-107
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...   385   e-107
Z99171-5|CAB16311.1|  280|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AC006730-4|ABO16461.1|  254|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    28   7.6  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    28   7.6  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    28   7.6  

>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical protein
            T08A11.2 protein.
          Length = 1322

 Score =  385 bits (948), Expect = e-107
 Identities = 183/212 (86%), Positives = 194/212 (91%)
 Frame = +3

Query: 45   EEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK 224
            EEEK+MGH+GVVLYEYLGEEYPEVLGSILGALKAI NVIGMTKMTPPIKDLLPRLTPILK
Sbjct: 984  EEEKMMGHMGVVLYEYLGEEYPEVLGSILGALKAICNVIGMTKMTPPIKDLLPRLTPILK 1043

Query: 225  NRHEKVQENCIDLVGRIADRGPEFVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIA 404
            NRHEKVQENCIDLVG IADRG EFVSAREWMRICF      KAHKK+IRRA +NTFG+IA
Sbjct: 1044 NRHEKVQENCIDLVGAIADRGSEFVSAREWMRICFELLELLKAHKKSIRRAAINTFGFIA 1103

Query: 405  KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELXVQN 584
            KAIGPHDVLATLLNNLKVQERQ RVCTTVAIAIV+ETC+PFTVLPA+MNEYRVPE+ VQN
Sbjct: 1104 KAIGPHDVLATLLNNLKVQERQLRVCTTVAIAIVSETCAPFTVLPAIMNEYRVPEINVQN 1163

Query: 585  GVLKSLSFLFEYIGEMGXDYIYAVXPLLXTRL 680
            GVLK+LSF+FEYIGEM  DYIYAV PLL   L
Sbjct: 1164 GVLKALSFMFEYIGEMAKDYIYAVVPLLIDAL 1195


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
            protein T08A11.2 protein.
          Length = 1322

 Score =  385 bits (948), Expect = e-107
 Identities = 183/212 (86%), Positives = 194/212 (91%)
 Frame = +3

Query: 45   EEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK 224
            EEEK+MGH+GVVLYEYLGEEYPEVLGSILGALKAI NVIGMTKMTPPIKDLLPRLTPILK
Sbjct: 984  EEEKMMGHMGVVLYEYLGEEYPEVLGSILGALKAICNVIGMTKMTPPIKDLLPRLTPILK 1043

Query: 225  NRHEKVQENCIDLVGRIADRGPEFVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIA 404
            NRHEKVQENCIDLVG IADRG EFVSAREWMRICF      KAHKK+IRRA +NTFG+IA
Sbjct: 1044 NRHEKVQENCIDLVGAIADRGSEFVSAREWMRICFELLELLKAHKKSIRRAAINTFGFIA 1103

Query: 405  KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELXVQN 584
            KAIGPHDVLATLLNNLKVQERQ RVCTTVAIAIV+ETC+PFTVLPA+MNEYRVPE+ VQN
Sbjct: 1104 KAIGPHDVLATLLNNLKVQERQLRVCTTVAIAIVSETCAPFTVLPAIMNEYRVPEINVQN 1163

Query: 585  GVLKSLSFLFEYIGEMGXDYIYAVXPLLXTRL 680
            GVLK+LSF+FEYIGEM  DYIYAV PLL   L
Sbjct: 1164 GVLKALSFMFEYIGEMAKDYIYAVVPLLIDAL 1195


>Z99171-5|CAB16311.1|  280|Caenorhabditis elegans Hypothetical
           protein F47G4.5 protein.
          Length = 280

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 420 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV 563
           HD L  +++N+   +  NR+     +A +A++     V  A MN +R+
Sbjct: 181 HDYLPVIIDNIISMDTSNRIIAAEGLAAIADSLGERLVKFAGMNSHRI 228


>AC006730-4|ABO16461.1|  254|Caenorhabditis elegans Hypothetical
           protein Y27F2A.10 protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 69  LGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKD 194
           L  VL  +   +    L  ++GA  +IVNVI +   TPP +D
Sbjct: 178 LATVLTNFSANQAIAELALLIGAQHSIVNVIVLITTTPPYRD 219


>Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.6 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/42 (30%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = -2

Query: 259 SIQFSCTFSC--LFFKMGVSLGRRSFIGGVIFVIPITLTIAF 140
           S+QF+ +F C  ++ ++  S+G  +F+   +F++P+T+T A+
Sbjct: 420 SVQFAGSFICPIIYLQLVESIGGFAFM---LFIVPLTITAAY 458


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform a
            protein.
          Length = 2322

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  IVNVI--GMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEFV 299
            +++VI  G+ K    I K++LP+L   L +  E +++  +DL+ +I    P  V
Sbjct: 1472 LIDVINDGLNKTNVHIWKEILPQLFARLSHPSEHIRKTLVDLISKICTAAPHAV 1525


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform b
            protein.
          Length = 2019

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  IVNVI--GMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEFV 299
            +++VI  G+ K    I K++LP+L   L +  E +++  +DL+ +I    P  V
Sbjct: 1472 LIDVINDGLNKTNVHIWKEILPQLFARLSHPSEHIRKTLVDLISKICTAAPHAV 1525


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
            mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 147  IVNVI--GMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEFV 299
            +++VI  G+ K    I K++LP+L   L +  E +++  +DL+ +I    P  V
Sbjct: 1472 LIDVINDGLNKTNVHIWKEILPQLFARLSHPSEHIRKTLVDLISKICTAAPHAV 1525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,517,862
Number of Sequences: 27780
Number of extensions: 361381
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)