Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P14
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    29   0.92 
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    29   1.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   6.5  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.6  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.6  

>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 190 KKDNSLNTLAESAKKTIEELREKVESALAPETVKK-KLWHDGRQLQRIX*KSEARGSTES 366
           KKD++   ++  A   IE  R ++   L P T +  K W DGR+  RI  ++E R S  +
Sbjct: 182 KKDDTKEEISLEAFIEIE--RHRLGPNLTPVTEENFKKWSDGRR-DRILKQAEERRSNRA 238

Query: 367 L-RSNFLVSKYITPN 408
           + RSN    +Y   N
Sbjct: 239 VGRSNLSGREYFESN 253


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 151 PMCIAFRQTRMLLKKDNSLNTL--AESAKKTIEELREKVE 264
           P CI++R  R + K  ++  TL  A SAK++  E REK +
Sbjct: 9   PACISYRGIRFMSKASDTDPTLANASSAKRSAFESREKAK 48


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 352 RGLQIFXKFVEAVYHRAKVFS*QSPGPRRIQLFPSIPQLFSSHSQPAYLGYCLSLGAF 179
           RG++   + V   ++R+ +F   +     +  F    QLF  H  PA+L   L +GAF
Sbjct: 631 RGIRTLPETVRNHFYRSTMFFYMTYVFHYLPFFIMGRQLFLHHYLPAHLAGSLLVGAF 688


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 320 SCLPSCQSFFLTVSGAKADSTFSLNSSIVFF 228
           +C+ SC + F+   GA      +L   I FF
Sbjct: 515 ACIVSCSTVFMLFDGATPSEIVALEQDIKFF 545


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 187 LKKDNSLNTLAESAKKTIEELREKVESALAPETVKKK 297
           LK+ NS++ L+ S +KTIE  R  + S +    + K+
Sbjct: 370 LKEKNSISELSPSLQKTIEWARVNLASTIYDTFIGKE 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,012
Number of Sequences: 5004
Number of extensions: 35778
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)