Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_P14
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical pr... 31 0.87
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr... 31 0.87
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr... 31 0.87
D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic nucleoti... 31 0.87
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 31 1.1
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 31 1.1
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 31 1.1
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 31 1.1
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 31 1.1
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 25 3.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.5
U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical pr... 29 6.1
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 29 6.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.1
>Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical
protein ZC84.2 protein.
Length = 733
Score = 31.5 bits (68), Expect = 0.87
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 178 RMLLKKDNSLNTLAESAKKTIEELREKVESAL 273
R +LKKDN L+ A +KT+EE+ E + +A+
Sbjct: 614 REILKKDNLLDENAPEEQKTVEEIAEHLNNAV 645
>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
protein F56C9.10b protein.
Length = 1031
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 187 LKKDNSLNTLAESAKKTIEELREKVESALAPETVKKK 297
+KKD L E +K EE +EKVE +AP K+K
Sbjct: 44 IKKDPKPEVLEEVVEKNREEDKEKVEETVAPTIEKEK 80
>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
protein F56C9.10a protein.
Length = 1028
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 187 LKKDNSLNTLAESAKKTIEELREKVESALAPETVKKK 297
+KKD L E +K EE +EKVE +AP K+K
Sbjct: 44 IKKDPKPEVLEEVVEKNREEDKEKVEETVAPTIEKEK 80
>D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 733
Score = 31.5 bits (68), Expect = 0.87
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 178 RMLLKKDNSLNTLAESAKKTIEELREKVESAL 273
R +LKKDN L+ A +KT+EE+ E + +A+
Sbjct: 614 REILKKDNLLDENAPEEQKTVEEIAEHLNNAV 645
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = +1
Query: 97 QISKMHKLLNXLVG*SASPMCIAFRQTRMLLKKDNSLNTLAESAKKTIEELREKVESALA 276
Q+SKM + G + +PM +A + ++L K+ ++ E+AK+ E+ R++ + L
Sbjct: 318 QLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDESREAAKQA-EKERDRAKKDLE 376
Query: 277 PETVKKKLWHDGRQLQR 327
E ++K D R+ +R
Sbjct: 377 KEEKRRK---DDREAER 390
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = +1
Query: 97 QISKMHKLLNXLVG*SASPMCIAFRQTRMLLKKDNSLNTLAESAKKTIEELREKVESALA 276
Q+SKM + G + +PM +A + ++L K+ ++ E+AK+ E+ R++ + L
Sbjct: 318 QLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDESREAAKQA-EKERDRAKKDLE 376
Query: 277 PETVKKKLWHDGRQLQR 327
E ++K D R+ +R
Sbjct: 377 KEEKRRK---DDREAER 390
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = +1
Query: 97 QISKMHKLLNXLVG*SASPMCIAFRQTRMLLKKDNSLNTLAESAKKTIEELREKVESALA 276
Q+SKM + G + +PM +A + ++L K+ ++ E+AK+ E+ R++ + L
Sbjct: 78 QLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDESREAAKQA-EKERDRAKKDLE 136
Query: 277 PETVKKKLWHDGRQLQR 327
E ++K D R+ +R
Sbjct: 137 KEEKRRK---DDREAER 150
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = +1
Query: 97 QISKMHKLLNXLVG*SASPMCIAFRQTRMLLKKDNSLNTLAESAKKTIEELREKVESALA 276
Q+SKM + G + +PM +A + ++L K+ ++ E+AK+ E+ R++ + L
Sbjct: 318 QLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDESREAAKQA-EKERDRAKKDLE 376
Query: 277 PETVKKKLWHDGRQLQR 327
E ++K D R+ +R
Sbjct: 377 KEEKRRK---DDREAER 390
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 184 LLKKDNSLNTLAESAKKTIEELREKVESALAPETVKKKLWHDGRQL 321
L KK L ++ KK E+L E ++SAL PE + K+ + +QL
Sbjct: 360 LKKKAIQLQETLDTLKKQEEKLMEDMQSALTPEAWRDKMSENMKQL 405
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 584 PPXGXPPPPP 555
PP G PPPPP
Sbjct: 75 PPWGLPPPPP 84
Score = 22.6 bits (46), Expect(2) = 3.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 587 PPPXGXPPP 561
PPP G PPP
Sbjct: 50 PPPFGPPPP 58
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 599 GXXXPPPXGXPPPPP 555
G PPP G PPPPP
Sbjct: 270 GSPPPPPTGSPPPPP 284
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 605 FXGXXXPPPXGXPPPPP 555
F G PP G PPPPP
Sbjct: 225 FRGKRQAPPAGSPPPPP 241
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 599 GXXXPPPXGXPPPPP 555
G PPP G PPPPP
Sbjct: 291 GSPPPPPTGSPPPPP 305
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 605 FXGXXXPPPXGXPPPPP 555
F G PP G PPPPP
Sbjct: 246 FRGKRQAPPAGSPPPPP 262
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 599 GXXXPPPXGXPPPPP 555
G PPP G PPPPP
Sbjct: 276 GSPPPPPTGSPPPPP 290
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 605 FXGXXXPPPXGXPPPPP 555
F G PP G PPPPP
Sbjct: 231 FRGKRQAPPAGSPPPPP 247
>U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical
protein T05A12.4b protein.
Length = 975
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 265 IQLFP-SIPQLFSSHSQPAYLGYCLSLGAFSFDE 167
+ LFP PQ FS + P YL + LSL + D+
Sbjct: 573 LNLFPFGSPQFFSQYVHPQYLNFALSLRDEALDK 606
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical
protein T05A12.4a protein.
Length = 1622
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 265 IQLFP-SIPQLFSSHSQPAYLGYCLSLGAFSFDE 167
+ LFP PQ FS + P YL + LSL + D+
Sbjct: 573 LNLFPFGSPQFFSQYVHPQYLNFALSLRDEALDK 606
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 587 PPPXGXPPPPP 555
PPP G PPPPP
Sbjct: 763 PPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 587 PPPXGXPPPPP 555
PPP G PPPPP
Sbjct: 763 PPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 587 PPPXGXPPPPP 555
PPP G PPPPP
Sbjct: 346 PPPGGCPPPPP 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,863,883
Number of Sequences: 27780
Number of extensions: 242748
Number of successful extensions: 1373
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -