Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P14
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 205  LNTLAESAKKTIEELREKVESALAPETVKKKLWHDG 312
            LNT  + +K  I E    +E A    T+    W DG
Sbjct: 1452 LNTRTKGSKPIIPEAARFIEVATNSITLHLNAWSDG 1487


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 599 GXXXPPPXGXPPPPP 555
           G    PP   PPPPP
Sbjct: 333 GDSDTPPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 587 PPPXGXPPPPP 555
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 259 LFPSIPQLFSSHSQPAYLG 203
           + P  P+L+  H  P +LG
Sbjct: 9   ILPLNPKLYDKHRAPKFLG 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,600
Number of Sequences: 438
Number of extensions: 3420
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)