Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P12
         (955 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    59   2e-07
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    56   2e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    54   5e-06
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    54   7e-06
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    51   5e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    43   0.013
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.053
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.093
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    40   0.12 
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   6.1  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 28/38 (73%), Positives = 29/38 (76%)
 Frame = +1

Query: 613 PWTXITKIDAQVRGGETRQDYXDTRRFPLXSSLVRSLF 726
           P T ITKIDAQVRGGETRQDY DTRRFPL +     LF
Sbjct: 22  PLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 59


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 36/78 (46%), Positives = 43/78 (55%)
 Frame = +3

Query: 384 RGEAVCVLGALPLPRSLTRCXRSFGCGERYQLTQRR*YGYPQNQVITQERTCEQKASKRP 563
           R   +C  G +PLPRSLTR  RSFGCGERY+LT         N +    +T  ++     
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTDG-----DGNFLEDTRKTLSKEEI--- 77

Query: 564 GTVKRPRCWRFSIGSAPL 617
               RPR  RFSIGSAPL
Sbjct: 78  ----RPRRSRFSIGSAPL 91



 Score = 49.2 bits (112), Expect = 2e-04
 Identities = 23/38 (60%), Positives = 25/38 (65%)
 Frame = +1

Query: 613 PWTXITKIDAQVRGGETRQDYXDTRRFPLXSSLVRSLF 726
           P T I K DAQ+ GGETRQDY D RRFPL +     LF
Sbjct: 90  PLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLF 127


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 54.0 bits (124), Expect = 5e-06
 Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 360 CINESANARGEAVCVLGALPLPRSLTRCXRSFGCGERYQL-TQRR*YGYPQNQVITQ 527
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ Q + Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 53.6 bits (123), Expect = 7e-06
 Identities = 25/38 (65%), Positives = 27/38 (71%)
 Frame = +1

Query: 613 PWTXITKIDAQVRGGETRQDYXDTRRFPLXSSLVRSLF 726
           P T ITK DAQ+ GGETRQDY DTRRFPL +     LF
Sbjct: 58  PLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLF 95


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 24/32 (75%), Positives = 24/32 (75%)
 Frame = -3

Query: 560 PFAGLLLTCSFLRYHLILWITVLPPLSELIPL 465
           P    LLTCSF  Y LILWITVLPPLSEL PL
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.7 bits (96), Expect = 0.013
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 163 DPDMIRYIDEFGQTTTXMQ 219
           DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.053
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 358 SALMNRPTRGERRFAYW 408
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.093
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 430 ERGSGRAPNTQTASPRALADSLMQ 359
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 39.5 bits (88), Expect = 0.12
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +2

Query: 485 KAVIRLSTESGDNAGKNM 538
           KAVIRLSTESGDNAGKNM
Sbjct: 42  KAVIRLSTESGDNAGKNM 59


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 583 VAGVFP*APPPWTXITKIDAQVRGGETRQDYXDTRRFPLXSSLVRSLF 726
           ++ +FP   PP T ITKI  Q +  +T+ +Y  T  FPL S     LF
Sbjct: 65  LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLF 112


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 241 EICDAIALFVTIISCNKQVNNNNCIHXMFQVQGEVWEVFSALMNRPTRGERRFAYW 408
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,896,326
Number of Sequences: 1657284
Number of extensions: 11264032
Number of successful extensions: 24966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24961
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88182286632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)