Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P12
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.1  
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ...    27   5.1  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   6.8  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   6.8  

>SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 119

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 803 PFIXXLXACXGFPXXRGVXVXXGXQSXGXXVCT 901
           PF+     C GF    G+ +  G  + G  +CT
Sbjct: 43  PFVPGCLLCGGFNAIGGLAIASGDLTNGSGICT 75


>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
           Taf11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 738 RTQVEQRAHEGAXQGETPGIXIVLSGFA 655
           +T V++ A++   Q  TP + IV+SGF+
Sbjct: 118 KTNVKKLANQILNQSVTPNVAIVISGFS 145


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +3

Query: 615 LDXHHKNRRSSQRWRNPTGLXRYQAF----PPG 701
           L  +HKNR+S+     P GL  Y+A     PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 498 GYPQNQVITQ--ERTCEQKASKRPGTVKRPRCWRFSIGSAPLDXHHKNRRSSQRWRNPT 668
           G P+ +V ++  E T  +  S   G+   PR  RF++G+     +  N   +Q + N T
Sbjct: 506 GPPRKRVTSRMSEHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANAT 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,900
Number of Sequences: 5004
Number of extensions: 42101
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)