Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P12
         (955 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36619-1|AAC16921.1|  176|Homo sapiens Y-chromosome RNA recognit...    33   1.2  
AF026564-1|AAC16916.1|  318|Homo sapiens RNA binding protein pro...    33   1.2  

>U36619-1|AAC16921.1|  176|Homo sapiens Y-chromosome RNA recognition
           motif protein protein.
          Length = 176

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 24/83 (28%), Positives = 29/83 (34%)
 Frame = -1

Query: 841 GKTXTGVEXXDEXXXPPXXXKGGXRXNXXXXRKEXYAGRTESARGSXPGGNAWYLYSPVG 662
           GK+  G E   E    P    GG R      R    +G   SARGS  G   W       
Sbjct: 65  GKSLDGKEIKVEQAKKPSFPSGGRRRPPPSSRNRSPSGSLRSARGSSGGTRPWLPSHEGH 124

Query: 661 XXXXXXXXXXX*XSSRGAEPMEK 593
                        SSRGA P+++
Sbjct: 125 LDDGGYALDLNTSSSRGAIPIKR 147


>AF026564-1|AAC16916.1|  318|Homo sapiens RNA binding protein
           protein.
          Length = 318

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 24/83 (28%), Positives = 29/83 (34%)
 Frame = -1

Query: 841 GKTXTGVEXXDEXXXPPXXXKGGXRXNXXXXRKEXYAGRTESARGSXPGGNAWYLYSPVG 662
           GK+  G E   E    P    GG R      R    +G   SARGS  G   W       
Sbjct: 70  GKSLDGKEIKVEQAKKPSFPSGGRRRPPPSSRNRSPSGSLRSARGSSGGTRPWLPSHEGH 129

Query: 661 XXXXXXXXXXX*XSSRGAEPMEK 593
                        SSRGA P+++
Sbjct: 130 LDDGGYALDLNTSSSRGAIPIKR 152


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,262,609
Number of Sequences: 237096
Number of extensions: 1875700
Number of successful extensions: 5020
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5020
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12603135794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)