Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P11
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.023
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   1.2  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    27   4.7  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 251 LILTAATCWLFWLCAYMAQMNPLIGP 328
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 132 SKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQ 227
           S+W  P+++       GVW ++ AP SHL+D+
Sbjct: 47  SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/69 (30%), Positives = 37/69 (53%)
 Frame = +2

Query: 41  KILITNGIHHLGAADICLR*SKLEEISNYHLKMGYSLIPIFVFSILWGVVGIICPIFAPK 220
           ++ +T GI    AA I +   KL + + + + +G +L        LWG++ +I  +F P+
Sbjct: 156 QLFVTGGIFI--AACINMGTHKLHKTAQWRVSIGINL--------LWGIITMIGILFLPE 205

Query: 221 GPNRGIIQV 247
            P R +IQV
Sbjct: 206 SP-RYLIQV 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,136
Number of Sequences: 5004
Number of extensions: 67446
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)