Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P09
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 828 PPPPPXXXXXGGXXSPRGGRXAXPFXXTPPP 920
           PPPPP     G    P  GR A P    PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPP---PPPP 366



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
 Frame = +3

Query: 804 PPXXXSGXPPPPP-XXXXXGGXXSPRGGRXAXPFXXTPPP 920
           PP   S  PPPPP      G    P     A      PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 859 GGPLXPGGXXGXGPSXXPPPXXPPP 933
           GGP  P    G   +  PPP  PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 804 PPXXXSGXPPPPPXXXXXGGXXSP 875
           PP    G PPPPP      G   P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.148    0.507 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,795
Number of Sequences: 5004
Number of extensions: 20195
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)