Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_P08
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 73 2e-13
02_01_0158 - 1103461-1104186 73 3e-13
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 2.8
09_06_0004 - 20133209-20133272,20133316-20133602 29 5.0
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 29 5.0
04_04_1582 - 34590698-34591199,34593849-34594690 29 5.0
03_01_0483 + 3689155-3689814 29 6.6
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 8.7
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 8.7
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 28 8.7
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 28 8.7
>08_01_0202 - 1638978-1639571
Length = 197
Score = 73.3 bits (172), Expect = 2e-13
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Frame = +1
Query: 238 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 417
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 418 GEKG-FEAAGVTGPGGEPVK-GSPYAADKRRGY 510
G G +A VT PGG + GS + RGY
Sbjct: 59 GNDGRTKAVDVTAPGGGALTGGSRPSGGGDRGY 91
>02_01_0158 - 1103461-1104186
Length = 241
Score = 72.9 bits (171), Expect = 3e-13
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 238 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 417
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 418 GEKG-FEAAGVTGPGGEPVKG 477
E G +A VTGP G VKG
Sbjct: 60 SEDGRTKAVDVTGPDGSFVKG 80
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 388 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 477
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>09_06_0004 - 20133209-20133272,20133316-20133602
Length = 116
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 501 PWLPPPIFPSXKVADEAVKELHAEED*DVVDPPPN 605
PW PPP+ + + A +L +D PPPN
Sbjct: 4 PWGPPPVSSLHRDGEAAKSKLKQADDPPSPSPPPN 38
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 29.1 bits (62), Expect = 5.0
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Frame = +1
Query: 265 WFNVKSGYGF-INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGE--------AVEFAVVA 417
W NV SG R +E V R +P +A + G E VA
Sbjct: 8 WINVSSGLDSGRQRGRRREGALVAWGGAQRTSPVEAAARMESGGWHRRTSMIVREELEVA 67
Query: 418 GE----KGFEAAGVTGPGGEPVKGSPYAADKRRG 507
G+ G EA G +GPGGE D RRG
Sbjct: 68 GDGRRASGVEAPGGSGPGGERTMAPANIDDSRRG 101
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 382 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 504
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 382 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 507
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 501 PWLPPPIFPSXKVADEAVKELHAEED*DVVDPPPN 605
P LPPP P ++ +++ EED D+ D PP+
Sbjct: 450 PPLPPP--PEPELNGAPAEDVSMEEDMDICDTPPH 482
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 453 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 325
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = -1
Query: 803 WPFXAEPDFVLPAPAXIARTHSAEPSSIHWARTSPTASTAKIATEKTALRWYNASFLTLI 624
W F P F P+ IA+ HSA+ + ++PT++T+ E T +W N SF TL+
Sbjct: 341 WIFGHIPGFSASLPSVIAKLHSAKDKYL----STPTSATSSSKMEDT--QW-NFSF-TLV 392
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 232 VIAEKVSGTVKWFNVKSGYGF--INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEF 405
+++EK GT +V+S + +N N + ED+ HQ A+ + +S G G+ +
Sbjct: 281 MVSEKNGGTD---SVESAFDNENVNSNISHEDMHQHQKVNAKGGRKGRYKSQGRGQIQQN 337
Query: 406 AVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 510
G A + +P+ G P D RG+
Sbjct: 338 TSGQGHVSSPATSGSDHVNKPIPG-PRMPDGTRGF 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,778,100
Number of Sequences: 37544
Number of extensions: 353016
Number of successful extensions: 1269
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -