Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_P04
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 183 3e-47
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 42 2e-04
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 41 2e-04
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 40 6e-04
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 39 8e-04
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 39 0.001
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 39 0.001
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 38 0.001
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 34 0.023
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 33 0.054
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 32 0.094
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 32 0.12
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 31 0.22
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 31 0.29
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 30 0.50
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 29 0.66
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 29 0.66
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 1.2
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 2.0
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 28 2.0
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 4.7
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.2
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 8.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 8.2
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 8.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 8.2
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 183 bits (445), Expect = 3e-47
Identities = 80/119 (67%), Positives = 100/119 (84%)
Frame = +1
Query: 454 KYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVET 633
KY +R+ +LP+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F+VRG MR VEFKVV+
Sbjct: 129 KYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDV 188
Query: 634 DPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 810
P F IV+ DT+IH +GEPI RE+EE +L VGYDDIGGCR+Q+AQI+E+VELPLRHP
Sbjct: 189 APDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHP 247
Score = 109 bits (262), Expect = 5e-25
Identities = 53/106 (50%), Positives = 70/106 (66%)
Frame = +3
Query: 129 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 308
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 309 GKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCP 446
GKRRK+TV IVL+D+ D R+ D+V+I PCP
Sbjct: 81 GKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCP 126
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPGT 877
LFK+IG+KPPRGILMYGPPGT
Sbjct: 249 LFKSIGIKPPRGILMYGPPGT 269
Score = 32.3 bits (70), Expect = 0.094
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 770 RKLRRWWSCHCVIXSLFKAIGVKPPRGILMYGPPGT 877
R+LR + F GV P +G+L +GPPGT
Sbjct: 507 RELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGT 542
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 41.5 bits (93), Expect = 2e-04
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPGT 877
LF +G+KPP+G+L+YGPPGT
Sbjct: 157 LFLRVGIKPPKGVLLYGPPGT 177
Score = 31.9 bits (69), Expect = 0.12
Identities = 9/27 (33%), Positives = 21/27 (77%)
Frame = +1
Query: 730 VGYDDIGGCRKQLAQIKEMVELPLRHP 810
+ + +GG +Q+ +++E++ELPL++P
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNP 155
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 41.1 bits (92), Expect = 2e-04
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPGT 877
L++ IG+ PPRG+L+YGPPGT
Sbjct: 159 LYRQIGIDPPRGVLLYGPPGT 179
Score = 29.1 bits (62), Expect = 0.88
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 730 VGYDDIGGCRKQLAQIKEMVELPL 801
V Y D+GG Q +++E VELPL
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPL 154
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 39.5 bits (88), Expect = 6e-04
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2
Query: 818 FKAIGVKPPRGILMYGPPGT 877
F+ +GVKPP+G LM+GPPGT
Sbjct: 211 FRKLGVKPPKGCLMFGPPGT 230
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 736 YDDIGGCRKQLAQIKEMVELPLR 804
Y DIGG KQ+ ++ E + LP++
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQ 206
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 39.1 bits (87), Expect = 8e-04
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPGT 877
LFK + PPRG+L+YGPPGT
Sbjct: 304 LFKFFNIMPPRGVLLYGPPGT 324
Score = 37.5 bits (83), Expect = 0.003
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 818 FKAIGVKPPRGILMYGPPG 874
F +GV+PP+G+L+YGPPG
Sbjct: 574 FSRLGVRPPKGVLLYGPPG 592
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +1
Query: 724 NAVGYDDIGGCRKQLAQIKEMVELPLRHP 810
+AV + IGG + Q+AQI+++VELP ++P
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNP 302
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 700 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRH 807
RE E+ N V + DIGG + ++KE VE PL H
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTH 570
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 730 VGYDDIGGCRKQLAQIKEMVELPLRHP 810
V Y D+GGC++Q+ +++E+VELPL P
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSP 202
Score = 36.7 bits (81), Expect = 0.004
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 818 FKAIGVKPPRGILMYGPPGT 877
F +G+ PP+GI++YGPPGT
Sbjct: 205 FVKLGIDPPKGIMLYGPPGT 224
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 682 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 810
D +P+ + + Y DIGG Q+ +IKE VELPL HP
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHP 214
Score = 36.7 bits (81), Expect = 0.004
Identities = 11/21 (52%), Positives = 19/21 (90%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPGT 877
L++ +G+KPP+G+++YG PGT
Sbjct: 216 LYEEMGIKPPKGVILYGAPGT 236
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +1
Query: 736 YDDIGGCRKQLAQIKEMVELPLRHP 810
Y+ +GG KQ+ +IKE++ELP++HP
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHP 168
Score = 37.9 bits (84), Expect = 0.002
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPGT 877
LF+++G+ P+GIL+YGPPGT
Sbjct: 170 LFESLGIPQPKGILLYGPPGT 190
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 34.3 bits (75), Expect = 0.023
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPGT 877
+F+ ++PPRG+L +GPPGT
Sbjct: 291 IFQRFNMQPPRGVLFHGPPGT 311
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 724 NAVGYDDIGGCRKQLAQIKEMVELPLRHPFTVQGY 828
+++ ++ +GG + Q+KEMV LPL +P Q +
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRF 295
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 33.1 bits (72), Expect = 0.054
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPG 874
+++ G+ PPRG+L++GPPG
Sbjct: 199 VYQYTGIHPPRGVLLHGPPG 218
Score = 31.9 bits (69), Expect = 0.12
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPG 874
L++++G+ P G+L++GPPG
Sbjct: 517 LYQSVGISAPTGVLLWGPPG 536
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 697 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPFTVQ 822
K E E + + DIGG + ++ E+V +P++HP Q
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQ 201
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 32.3 bits (70), Expect = 0.094
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 815 LFKAIGVKPPRGILMYGPPGT 877
+F + + PPRG+L +GPPGT
Sbjct: 397 VFLHLHITPPRGVLFHGPPGT 417
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 676 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 810
H D + I+ + + ++ IGG + Q+KEMV LPL +P
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYP 395
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 830 GVKPPRGILMYGPPGT 877
G+KP G+L+YGPPGT
Sbjct: 684 GLKPRSGVLLYGPPGT 699
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 730 VGYDDIGGCRKQLAQIKEMVELPLRHP 810
V +DDIGG + +++ ++LPL+ P
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFP 678
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 818 FKAIGVKPPRGILMYGPPGT 877
F +G K PRG+L+ GPPGT
Sbjct: 292 FTRLGGKLPRGVLLTGPPGT 311
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 779 RRWWSCHCVIXSLFKAIGVKPPRGILMYGPPGT 877
RR ++ + + +G+ +GIL+YGPPGT
Sbjct: 283 RRAFASRLFPPGMVEKLGINHVKGILLYGPPGT 315
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 29.9 bits (64), Expect = 0.50
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 830 GVKPPRGILMYGPPGT 877
G KP GIL+YGPPGT
Sbjct: 158 GRKPWSGILLYGPPGT 173
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 29.5 bits (63), Expect = 0.66
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 818 FKAIGVKPPRGILMYGPPGT 877
++ +G K PRG ++ GPPGT
Sbjct: 321 YERLGAKIPRGAILSGPPGT 340
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 29.5 bits (63), Expect = 0.66
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 103 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 276
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 277 NSSVVTQSCSRANAARKPFASCS 345
S + + +AA F+ S
Sbjct: 343 RSPPINFDGTSYDAAGNVFSPSS 365
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 150 SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 323
S +D+S + RR R + + A S D++ V A S +L G+T+ K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302
Query: 324 ETVCIVLSD 350
VC+ L+D
Sbjct: 303 AAVCVALND 311
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 154 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 267
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 836 KPPRGILMYGPPGT 877
+P RG+L++GPPGT
Sbjct: 490 EPARGMLLFGPPGT 503
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 730 VGYDDIGGCRKQLAQIKEMVELPLRHP 810
V +DDIGG + + Q+ + V PL++P
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYP 112
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +2
Query: 842 PRGILMYGPPG 874
P+G+L+YGPPG
Sbjct: 125 PKGLLLYGPPG 135
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 655 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 744
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 175 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANA 318
SSV S S ++M++ + +F+ S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 153 PD-DLSTAILRRKDRPNRLIVEEAVSD 230
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 126 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 284
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 836 KPPRGILMYGPPGT 877
+P +G+L++GPPGT
Sbjct: 410 EPVQGMLLFGPPGT 423
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 450 LKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 358
LKD WI + + E F G ++FS+QG
Sbjct: 441 LKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,543,928
Number of Sequences: 5004
Number of extensions: 71979
Number of successful extensions: 243
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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