Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P03
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    29   6.2  
AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in ...    29   6.2  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    29   6.2  
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    29   6.2  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   8.1  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   8.1  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   8.1  

>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
           cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 111 YHVWIQINPQXKGDPRPRYQQ-FNLKGFP 28
           YH+  Q+ P   GD  P  QQ  NL GFP
Sbjct: 384 YHLENQMRPMKSGDQLPLNQQNHNLSGFP 412


>AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform d protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 111 YHVWIQINPQXKGDPRPRYQQ-FNLKGFP 28
           YH+  Q+ P   GD  P  QQ  NL GFP
Sbjct: 78  YHLENQMRPMKSGDQLPLNQQNHNLSGFP 106


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 111 YHVWIQINPQXKGDPRPRYQQ-FNLKGFP 28
           YH+  Q+ P   GD  P  QQ  NL GFP
Sbjct: 307 YHLENQMRPMKSGDQLPLNQQNHNLSGFP 335


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 111 YHVWIQINPQXKGDPRPRYQQ-FNLKGFP 28
           YH+  Q+ P   GD  P  QQ  NL GFP
Sbjct: 384 YHLENQMRPMKSGDQLPLNQQNHNLSGFP 412


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 477 SHVLSCVIXLILWITVLPPLSELIPLAA 394
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 477 SHVLSCVIXLILWITVLPPLSELIPLAA 394
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 477 SHVLSCVIXLILWITVLPPLSELIPLAA 394
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,258,975
Number of Sequences: 27780
Number of extensions: 326091
Number of successful extensions: 799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)