Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P02
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   186   4e-48
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    29   1.2  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.3  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   8.3  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  186 bits (453), Expect = 4e-48
 Identities = 88/122 (72%), Positives = 102/122 (83%)
 Frame = +3

Query: 315 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 494
           KIRY+SL+DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK 
Sbjct: 45  KIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQ 104

Query: 495 FMEALQAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSG 674
           FMEA  +GADISMIGQFGVGFYS+YLVAD+V V SKHNDDEQY+WESSAGGSFTV  D+ 
Sbjct: 105 FMEAAASGADISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTD 164

Query: 675 EP 680
            P
Sbjct: 165 GP 166



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +2

Query: 239 IINTFYSNKEIFLRELISNSSDAL 310
           IINT YSNKEIFLRELISN+SDAL
Sbjct: 20  IINTVYSNKEIFLRELISNASDAL 43



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 764 KEHSQFXGYPIKLMVEKXREK 826
           K+HS+F  YPI+L+V +  EK
Sbjct: 196 KKHSEFISYPIQLVVTREVEK 216



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 184 AEVETFAFQAEIAQLMS 234
           +  ETF F+AEI+QLMS
Sbjct: 2   SNTETFKFEAEISQLMS 18


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 650 VHSPPRQR*APWVEVQRSSFTSKRTWQNSWKNPNQRDRKEHSQFXGYPIKLMVEKXREKN 829
           VH+ P Q+ + +V  Q++S +S  ++QN   NP  +   ++S   G P      K +  +
Sbjct: 221 VHNTPMQQ-SMYVPQQQTSHSSGASYQNESANPPVQSPMQYSYSQGQPFSYPQHKNQSFS 279

Query: 830 CLMMKP 847
              + P
Sbjct: 280 ASPIDP 285


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -1

Query: 496 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 338
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 473 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 366
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 335 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 463
           H S K    +R+   D +  +ER H+  +R+R  YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,816
Number of Sequences: 5004
Number of extensions: 73417
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)