Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_P01
(946 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 104 2e-23
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.077
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 29 0.72
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 27 3.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 5.1
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 27 5.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 8.9
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 104 bits (250), Expect = 2e-23
Identities = 56/125 (44%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Frame = +2
Query: 140 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 316
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT Q GD+ I G NPSAE+A+E +
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 317 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVXKLEEKAPDQVEVFKTNMNKV 496
E+ ++V + RL T +F DKKSY Y+K YMK + +L+E P++V VF+ N
Sbjct: 60 EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117
Query: 497 MKDIL 511
+K IL
Sbjct: 118 VKKIL 122
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/46 (52%), Positives = 29/46 (63%)
Frame = +3
Query: 519 FKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLXXXXF 656
FK+ F+ GESMD D MV +M YR+ DG P M+FFK GL F
Sbjct: 125 FKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.7 bits (71), Expect = 0.077
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -1
Query: 199 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQTN*TGKPKSXS*GIPI 32
+F + + L T + LI + +E+IK KNR +GF TN + K+ + G+PI
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVN-GLPI 557
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.72
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 335 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVXKLEEKAPDQVEVFKT 481
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 3.8
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +2
Query: 38 NPLRX*FWLSGLVCLRREAVLSVFIIFNRLQ-SIKMK-IYKDIITGDEMFSDTYKMKLVD 211
NP++ F G VC+ A+LS+ I N+ Q +I + IY + +FS + +V+
Sbjct: 6 NPIKALFTGIGTVCVGVGALLSILCIINQTQHNIAFQNIYFIQLNTTSIFSVANQTAVVN 65
Query: 212 ---EVIYEVTGRLV 244
++ E+TG LV
Sbjct: 66 NTSNLLNELTGTLV 79
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 177 ISSPVIMSL*IFILMDWRRLKII 109
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 242 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 385
+T G Q + F PS E +E TD+ ++ V ++ V F D
Sbjct: 6 LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 612 VFAYHQSLYIPSWQPC-HHN 556
V A+ Q L++P W PC HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 355 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 257
V++D +NS LDG + + S R +T LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,347
Number of Sequences: 5004
Number of extensions: 48997
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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