Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_P01
         (946 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    79   7e-15
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109...    29   4.1  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    29   7.1  
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    28   9.4  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 3/130 (2%)
 Frame = +2

Query: 140 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 310
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 311 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVXKLEEKAPDQVEVFKTNMN 490
            D      VDIV   RL E   F DKK +  ++K Y+K L  KL+    ++ E FK N+ 
Sbjct: 60  VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLD---AEKQEEFKKNIE 115

Query: 491 KVMKDILXQV 520
              K +L ++
Sbjct: 116 GATKYLLGKL 125



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +3

Query: 516 RFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGL 641
           + K+LQFF GESM  DG +    Y+  DG   P  ++F HGL
Sbjct: 124 KLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGL 163


>02_05_1057 +
           33809982-33810366,33810436-33810687,33810727-33810926,
           33811021-33811122
          Length = 312

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +2

Query: 176 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLN 352
           +FS       VDE I +E+    +    G+I ++GF         G D+AVE  ++ V  
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158

Query: 353 HRLVETYAFGDKKS--YTLYLKD 415
            R+ E      K S  Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 245 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGD 385
           TR+   +Q++GF PSA ++ +G+ + V S  +  IV   +L +T   G+
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGN 875


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 263 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 391
           + I   N S EE +E  ++A    VD+ LN   +E   +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,624,270
Number of Sequences: 37544
Number of extensions: 298499
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)