Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O24
         (1283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       32   0.85 
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669...    31   1.5  
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720...    30   4.5  
09_06_0175 + 21350528-21351136                                         29   6.0  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 32.3 bits (70), Expect = 0.85
 Identities = 30/111 (27%), Positives = 31/111 (27%), Gaps = 6/111 (5%)
 Frame = -1

Query: 326 GXSXGPXXXRXXXDPGGXXAGGXGGACXXXXXGC-AXPPXXXGAXRRXRRXAXXGXXGGG 150
           G + GP        PGG   GG          G  A PP   G           G  GGG
Sbjct: 95  GGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG 154

Query: 149 GAXXXPXXPRRG-----XPAXXXGXGXAXAXXXXXXXXXPPPPXPXXXGGG 12
           GA   P    RG      P    G G              P   P   GGG
Sbjct: 155 GALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGG 205


>04_03_0849 +
           20265511-20265984,20266452-20266617,20266694-20266905,
           20267154-20267647,20267732-20267780,20267922-20268251
          Length = 574

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
 Frame = -1

Query: 395 PTRXAXXAXXRXXGXRRGXXQXPGXSXGPXXXRXXXDPGGXXAGG--XGGACXXXXXGCA 222
           P R A     R  G R+G    P    GP        PGG  AGG    GA        A
Sbjct: 10  PLRLAWCPASRRWGRRKGRPPCPSSLPGPRHDHAVKRPGGEAAGGRSVNGAAPAPAPAPA 69

Query: 221 XPPXXXGAXRRXRR 180
             P      RR RR
Sbjct: 70  EAP-AKAPQRRQRR 82


>11_05_0004 -
           18269416-18269473,18270319-18270509,18271061-18272004,
           18272083-18272254,18272332-18272407,18272498-18272617,
           18272795-18272959,18273048-18273138,18273673-18273757,
           18273873-18274043,18274151-18274207,18274290-18274385,
           18275223-18275365,18275464-18275530
          Length = 811

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 740 IXXPKKXAPWEXKPLISPXPPKXXKVP 660
           I  P++ +PW+ +P +SP P     VP
Sbjct: 366 IPRPERVSPWQIEPAVSPPPVNPLPVP 392


>09_06_0175 + 21350528-21351136
          Length = 202

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -1

Query: 284 PGGXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGGA 144
           PGG  A G    C     G   PP       R RR A     GGGGA
Sbjct: 40  PGGVGARG-ARRCVRPRRGARPPPLHHQQPPRRRRRAVEESRGGGGA 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,129,766
Number of Sequences: 37544
Number of extensions: 478334
Number of successful extensions: 1477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)