Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O24
         (1283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    37   0.035
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    35   0.14 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    35   0.14 
AC024214-13|AAM97984.1|  296|Caenorhabditis elegans Collagen pro...    30   3.1  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    30   4.1  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   7.1  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 36.7 bits (81), Expect = 0.035
 Identities = 27/89 (30%), Positives = 27/89 (30%)
 Frame = -1

Query: 281 GGXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGGAXXXPXXPRRGXPAX 102
           GG    G GG C     GCA PP    A          G  GGGG          G    
Sbjct: 37  GGGGGCGGGGGCGG---GCAPPPPPP-ACGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGC 92

Query: 101 XXGXGXAXAXXXXXXXXXPPPPXPXXXGG 15
             G G             PPPP P   GG
Sbjct: 93  GGGGGGCGGGGGCGGGCAPPPPPPACGGG 121



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -1

Query: 281 GGXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGG 147
           GG   GG GG C     GC       G           G  GGGG
Sbjct: 138 GGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGG 182


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 21/56 (37%), Positives = 21/56 (37%)
 Frame = -1

Query: 281 GGXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGGAXXXPXXPRRG 114
           GG   GG GG C     GCA PP   G           G  GGGG    P  P  G
Sbjct: 31  GGGCGGGCGGGCGGGG-GCAPPPAPCGGG----CGGGGGGCGGGGGCAPPPAPCGG 81



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 284 PGGXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGG 147
           P G   GG GG C     GCA PP   G           G  GG G
Sbjct: 54  PCGGGCGGGGGGC-GGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCG 98


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 21/56 (37%), Positives = 21/56 (37%)
 Frame = -1

Query: 281 GGXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGGAXXXPXXPRRG 114
           GG   GG GG C     GCA PP   G           G  GGGG    P  P  G
Sbjct: 31  GGGCGGGCGGGCGGGG-GCAPPPAPCGGG----CGGGGGGCGGGGGCAPPPAPCGG 81



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 284 PGGXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGG 147
           P G   GG GG C     GCA PP   G           G  GG G
Sbjct: 54  PCGGGCGGGGGGC-GGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCG 98


>AC024214-13|AAM97984.1|  296|Caenorhabditis elegans Collagen
           protein 106 protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 24/87 (27%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
 Frame = -1

Query: 347 RGXXQXPGXSXGPXXXRXXXDPGGXXA--GGXGGACXXXXXGCAXPPXXXGAXRRXRRXA 174
           RG    PG             PG   A     GGAC     G A PP   G         
Sbjct: 100 RGPNGAPGLDGPDGLDGPDGHPGYAAAIKENFGGACISCPAGPAGPPGPDGCAGEPGTDG 159

Query: 173 XXGXXGGGGAXXXPXXPRRGXPAXXXG 93
             G  G  GA   P  P    P    G
Sbjct: 160 APGEDGQNGAPGSPGGPGETGPQGHQG 186


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
 Frame = -1

Query: 314 GPXXXRXXXDPGGXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGG--AX 141
           GP        PG     G GGA      G   PP   G      +    G  GG G  A 
Sbjct: 250 GPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGPGTDAA 309

Query: 140 XXPXXPRRGXPAXXXGXG 87
             P  PR   PA   G G
Sbjct: 310 YCPCPPR--TPAGGGGGG 325


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -1

Query: 278 GXXAGGXGGACXXXXXGCAXPPXXXGAXRRXRRXAXXGXXGGGGAXXXPXXP 123
           G   GG GG C     G A P    GA          G  G  GA      P
Sbjct: 109 GGGGGGGGGGCCSCGIGAAGPAGPPGADGNPGTDGAAGNPGQAGADASQDAP 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,550
Number of Sequences: 27780
Number of extensions: 320347
Number of successful extensions: 1030
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)