Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O21
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   185   6e-48
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   184   1e-47
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    28   2.0  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    27   3.5  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   8.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   8.1  

>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  185 bits (451), Expect = 6e-48
 Identities = 88/130 (67%), Positives = 105/130 (80%), Gaps = 1/130 (0%)
 Frame = +3

Query: 138 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 314
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 315 GFLVVNGXKIAVFSERDPKAIPWGKAGAEYVVKSTGVFTTTDKASAHLEGGAKKVIISAP 494
           G LV++G  I V +ERDP  I W  +GA+YV++STGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65  GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124

Query: 495 SADAPHVCCG 524
           S DAP    G
Sbjct: 125 SKDAPMYVVG 134



 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 34/70 (48%), Positives = 41/70 (58%)
 Frame = +1

Query: 472 KKLLYQLPVLMPPMFVVGVNLKAYDPSXKVISNASCTTNCLXPTCXGYX**LXXC*GLMT 651
           K+++   P    PM+VVGVN + ++PS KVISNASCTTNCL P             GLMT
Sbjct: 117 KRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMT 176

Query: 652 TVLAXXVTXK 681
           TV A   T K
Sbjct: 177 TVHATTATQK 186


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  184 bits (448), Expect = 1e-47
 Identities = 88/130 (67%), Positives = 104/130 (80%), Gaps = 1/130 (0%)
 Frame = +3

Query: 138 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 314
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 315 GFLVVNGXKIAVFSERDPKAIPWGKAGAEYVVKSTGVFTTTDKASAHLEGGAKKVIISAP 494
           G LV++G  I V +ERDP  I W  +GAEYV++STGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124

Query: 495 SADAPHVCCG 524
           S DAP    G
Sbjct: 125 SKDAPMFVVG 134



 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 36/70 (51%), Positives = 42/70 (60%)
 Frame = +1

Query: 472 KKLLYQLPVLMPPMFVVGVNLKAYDPSXKVISNASCTTNCLXPTCXGYX**LXXC*GLMT 651
           K+++   P    PMFVVGVNL+ ++PS KVISNASCTTNCL P             GLMT
Sbjct: 117 KRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMT 176

Query: 652 TVLAXXVTXK 681
           TV A   T K
Sbjct: 177 TVHATTATQK 186


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -2

Query: 524 PTTNMGGISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPRNGLRVPF*E-N 348
           P      + +G  +N  +S    +  C +C G     + ++ +P F  R  +R+P    N
Sbjct: 146 PVKRTCSVCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGF--RQQMRMPCNACN 203

Query: 347 SNFXTINNK 321
            N  TI +K
Sbjct: 204 GNGRTIKHK 212


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 427 LPLQIKHLLTWREVLKKLLYQLPVLMPPMFVVGVNLKAYDPSXKVISNASCTTNCLXPTC 606
           L + ++HL+++ E L  LL   P  + P+F   V   A     +   NAS  TN   PTC
Sbjct: 64  LNIDLRHLISYNEDLAHLLLSQPTDILPLFESAVTTVAKRLLYRSQENAS--TN--IPTC 119


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 94  SVIQQIFYNLPRTCQKLESMDL 159
           +++QQI +NL R CQ + + D+
Sbjct: 245 NILQQIRFNLERICQDIGNFDV 266


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 344 NFXTINNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLS 204
           +F  + N+ESIL+L   L +     + E I++IV+   +D R     HLS
Sbjct: 338 SFKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLS 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,961
Number of Sequences: 5004
Number of extensions: 58235
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)