Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O20
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo...    54   3e-08
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.54 
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   4.7  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   8.2  

>SPBC83.06c |||mitochondrial ribosomal protein subunit
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 59

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 306 GIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHK 410
           G K+K  V++RC SCYFV R  R+Y++C K PRHK
Sbjct: 21  GFKVKASVKKRCSSCYFVRRKGRLYVLCKKHPRHK 55


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect(2) = 0.54
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 880 PPPPPPXXXKKK 845
           PPPPPP   KK+
Sbjct: 25  PPPPPPGYVKKR 36



 Score = 23.4 bits (48), Expect(2) = 0.54
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 883 NPPPPPP 863
           NPPPPPP
Sbjct: 8   NPPPPPP 14


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 105 FKCYLE*TILSIVQ*XFTSGKMQKLFSLVKVANSLIGGNVLPIL 236
           FK Y E T+   V+  +   +  + F LV++A+SL   +V+P++
Sbjct: 333 FKLYFELTLQVYVRNLYARLESPQQFVLVQIASSLTMMSVIPLI 376


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 162 GKMQKLFSLVKVANSLIGGNVLPILNRISQPSVTNFVKPVIPLVTQISGIKIKGRVRR 335
           G +  L +  +  +S IGG++    N I +    + V    PLVT  SG+   GR  R
Sbjct: 378 GSVDDLLNTRQFTSSPIGGSMPKGPNSIYKIPSASMVNLSSPLVTSPSGLNPTGRPSR 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,131
Number of Sequences: 5004
Number of extensions: 48790
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)