Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O17
         (1062 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 795 PXPXPPXXXXGXXXXXXXXPPPPPPXPP 878
           P P PP    G        PPPPPP PP
Sbjct: 762 PPPPPPPGVAGAG------PPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
 Frame = +3

Query: 720 PPXPPXXFXXXXXKKKXXXXXXXPXPX-PXPPXXXXGXXXXXXXXPPPPPP 869
           PP PP                  P    P PP    G        PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 795 PXPXPPXXXXGXXXXXXXXPPPPPPXPPXXXXXXXPXP 908
           P P P              PPPPPP P        P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 16/66 (24%), Positives = 16/66 (24%)
 Frame = +3

Query: 678 PPPXXXXXXXXXXLPPXPPXXFXXXXXKKKXXXXXXXPXPXPXPPXXXXGXXXXXXXXPP 857
           PPP           PP  P                  P P P P               P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKP-PLPPPSSRVSAAALAANKKRP 311

Query: 858 PPPPXP 875
           PPPP P
Sbjct: 312 PPPPPP 317



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 855 PPPPPXPPXXXXXXXPXP 908
           PPPPP P        P P
Sbjct: 337 PPPPPPPRSNAAGSIPLP 354


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 787 SPXPPPXPPXXXXXXXXXXXXPPXPPPP 870
           +P PPP PP            PP PPPP
Sbjct: 8   NPPPPPPPPGFEPPSQ-----PPPPPPP 30



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 788 PPPXPPPPXXXXXXXXXXXXXPPXPPP 868
           PPP PPPP             PP PPP
Sbjct: 9   PPPPPPPPGFEPPSQP-----PPPPPP 30


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 852 PPPPPPXPP 878
           PPPPPP PP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 852 PPPPPPXPP 878
           PPPPPP PP
Sbjct: 189 PPPPPPPPP 197


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 852 PPPPPPXPP 878
           PPPPPP PP
Sbjct: 945 PPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,895
Number of Sequences: 5004
Number of extensions: 24208
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)