Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O16
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    34   0.16 
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    34   0.16 
U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr...    29   4.5  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +3

Query: 129  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 305
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 306  DEVAQTLEICKRSLK 350
            DE+ +     + +LK
Sbjct: 1080 DEITKQKHDVETTLK 1094


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +3

Query: 129  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 305
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 306  DEVAQTLEICKRSLK 350
            DE+ +     + +LK
Sbjct: 1080 DEITKQKHDVETTLK 1094


>U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical
           protein F22F1.3 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 112 QLLMQNLKSRPLRRIRIHQFDKL 180
           +LL  N KSR  RRIRIH  DKL
Sbjct: 127 RLLKPNAKSRITRRIRIHVIDKL 149


>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
           protein C50F2.2 protein.
          Length = 1029

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +3

Query: 66  PRXQSKKSCCL*RMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR 245
           P    K+S  L  +P     K E+    ED+   + +    +  K+++  KR+SK    R
Sbjct: 152 PEKSLKESGSL--LPELVEKKREEKRQQEDQKAVVLEKRKPVTQKVQDHLKRRSKSPIGR 209

Query: 246 DLQKAGKEL--NSDQKVAVAKYDEVAQTLEICKRS 344
              ++ K++  N  +K+     +E+ +  +I K++
Sbjct: 210 GKDQSDKDIISNKKRKLNRQSKEEIDERSKIAKKA 244


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 111 SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 266
           S+    S  PAS+ D DT +R+I   +E  +++ ++  + +  +R   + G+
Sbjct: 9   SSRAMSSASPASASDSDTSVRKIGKALETYLKHSQQHVAMMEKHRAEFETGR 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,356,181
Number of Sequences: 27780
Number of extensions: 265705
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)