Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O15
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   1.5  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   2.6  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 156  NIFLGH*SFL--LYRLVKVYTPHLVFFMKKGLLLARRPFQFDQDRWAST 296
            +I+LG  + L  L+  + V+ PHL++F    L +   PF F+  +++ T
Sbjct: 1485 SIYLGSRTLLMLLFGTMTVWIPHLIYFWISTLAMCISPFIFNPHQFSWT 1533


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 595 FRNVPRVSDVQXRRLXKEGATY---YSEIINYWCSVL*VRTIILFLPQSSPALRLQGLGA 425
           + N P    +    +  EGA +   +S    Y CSV   RT+ L+  +SSP L   G G 
Sbjct: 177 YNNPPSCVSIDTYLVGHEGACFDLKFSSDGRYLCSVSEDRTLRLWSIESSPFLIATGFGH 236

Query: 424 AA 419
           +A
Sbjct: 237 SA 238


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 228 KKQGGAYTPSLIYTIKNFNDQERYFQFSQVHSNMINSK 115
           KK    YTP   ++  NFN +  Y  ++ +H    + K
Sbjct: 412 KKYSQFYTPGYSFSTPNFNTRTLYAIYASLHDQAFHKK 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,268
Number of Sequences: 5004
Number of extensions: 58146
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)