Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_O10
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 32 0.71
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 31 1.6
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 30 2.2
03_05_0373 + 23581812-23583293 30 2.2
05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824 30 2.9
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604... 30 2.9
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 29 5.0
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 6.7
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 28 8.8
07_01_0341 + 2461106-2461326,2461421-2461700 28 8.8
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 28 8.8
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 28 8.8
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 31.9 bits (69), Expect = 0.71
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +2
Query: 527 VQESQKLAKKVSSNVQETNEKLAPK---IKAAYDDFAKNTQEVIKKIQEAANAKQ*ASI 694
+QES++ +K++ Q+ E+L + I+ A+DD KN++ ++ + QE AKQ ASI
Sbjct: 784 LQESRETIQKLAQFGQQQQEELLSRQEQIRHAHDDLMKNSESIL-EAQEEFRAKQ-ASI 840
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 497 EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 643
EKLQ + + QE+Q+L KK+SS V E +++ ++ + + A+ E
Sbjct: 153 EKLQKEISSLSQENQELKKKISS-VLENSDRAESEVASLKEALAQQEAE 200
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +2
Query: 485 TALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQE 664
TA E+L+A +Q T +++ + AKK + + NE+L K + A + + Q+ +++++E
Sbjct: 966 TAEVEQLKALLQ-TERQATETAKKEYAEAERRNEELIKKFEGA-EKKIEQLQDTVQRLEE 1023
Query: 665 AA 670
A
Sbjct: 1024 KA 1025
>03_05_0373 + 23581812-23583293
Length = 493
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 472 DVQGGPCGAPRPCARCSASTVPKPPW 395
D GG A +RCSAST PK PW
Sbjct: 53 DGAGGYGSAASSPSRCSASTPPKSPW 78
>05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824
Length = 200
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 488 ALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEA 667
A +EK QAA + + +Q K SS Q +K A + T++ +K E
Sbjct: 58 ATKEKAQAAKERASETAQAAKDKTSSTSQAARDKAAESKDQTGGFLGEKTEQAKQKAAET 117
Query: 668 ANA 676
A A
Sbjct: 118 AGA 120
>03_02_0161 +
6046949-6047063,6048759-6048844,6049029-6049094,
6049408-6049860,6049960-6050115,6050319-6050465,
6050570-6050641,6050730-6051293
Length = 552
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 494 REKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAAN 673
R LQ +Q +++ +A+K + + N+KL K+KA DD + ++ A
Sbjct: 337 RRLLQGEIQR-LRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRNESSNTSASNKDNAT 395
Query: 674 AKQ 682
+KQ
Sbjct: 396 SKQ 398
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 238 DFRNNSLTRSPSQRTHRNFSKAWKDGSEFRAATAQRLRQEVSXEALGDAN 387
DFRN ++++ Q T+ A DG +F+A + + S A D N
Sbjct: 2383 DFRNINISQVELQLTYEGLPFAVSDGKKFKAKSTSQKEPTASLIAASDFN 2432
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +2
Query: 473 EKNATALR-EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKA---AYDDFAKNTQ 640
EKNA L+ ++L+A ++N E ++ +VS+ +++ NE+L KI + ++ Q
Sbjct: 832 EKNAALLQVQQLEANLKNLESELEQKQSQVSA-LEQANEELREKISSLERQLEEARSKLQ 890
Query: 641 EVIKKIQ 661
+ I K+Q
Sbjct: 891 DEIIKLQ 897
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Frame = +1
Query: 121 RQVRSSLSPAFALAQGAXVRRXAPDFFKDIETPHQGVP*DFRNNSLTRS----------P 270
R+ RS++ P +G R + D TPH G + R+N++ RS
Sbjct: 312 REYRSTM-PCHDFVKGRCSRGANCRYVHDDSTPHGGWRDEVRDNAIGRSGPDSSYGNRTE 370
Query: 271 SQRTHRNFSKAWKDGSEFRAATAQRLRQEVSXEALG 378
+RT++N K + +G R L +E S +G
Sbjct: 371 HRRTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMG 406
>07_01_0341 + 2461106-2461326,2461421-2461700
Length = 166
Score = 28.3 bits (60), Expect = 8.8
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 241 FRNNSLTRSPSQRTHRNFSKAWKDGSEFRAATAQRLRQEVSX-EALGDANGKAKEALEQ 414
F + S+ P QR + S + E RAA + +V+ EALG A GK EALEQ
Sbjct: 15 FGDGSVRLMPPQRPLPS-SATNRFAEELRAAGVMDVNGKVNQGEALGAAVGKIVEALEQ 72
>04_04_0285 -
24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 470 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDD 622
+EK++ ++ E+ Q+ + Q+ +K AKKVSS E+ + K + Y +
Sbjct: 516 LEKSSKSILEETQSVGHTSQQKKRKKAKKVSSVDMESLDISGEKDQCGYGE 566
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 509 AAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 658
A TVQ + L +K+ SN+ + E+L + K + D+ + EVI+KI
Sbjct: 69 AFFSKTVQGAVDLIEKMVSNMGWSKERLQTRQKPSVDEQFAHFVEVIQKI 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,616
Number of Sequences: 37544
Number of extensions: 294073
Number of successful extensions: 1143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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