Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_O09
(929 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 34 0.14
02_01_0062 - 448105-448145,448780-448866,449664-449790 32 0.57
02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108 29 5.3
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 26 6.0
06_03_1153 - 28047125-28047751 29 7.0
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 29 7.0
02_05_0686 - 30900748-30902167,30903442-30904742 29 7.0
07_03_1136 + 24218601-24218734,24218769-24219906 28 9.2
07_01_0479 + 3606663-3607448 28 9.2
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 28 9.2
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 9.2
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 28 9.2
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 34.3 bits (75), Expect = 0.14
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 692 GXSPXAPPPPXXPXKXSPPXXGXGKPP 772
G P PPPP P PP G G PP
Sbjct: 346 GSGPPPPPPPAAPAAPRPPGPGPGPPP 372
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Frame = +3
Query: 219 GPGAGXPPXXG----G*GGPXXKKXLGG---XGPPPXKR 314
GPG G PP G G GGP GG GPPP K+
Sbjct: 365 GPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPPFKK 403
>02_01_0062 - 448105-448145,448780-448866,449664-449790
Length = 84
Score = 32.3 bits (70), Expect = 0.57
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 698 SPXAPPPPXXPXKXSPPXXGXGKP 769
SP PPPP P + +PP G G P
Sbjct: 17 SPPPPPPPFFPPQWAPPVPGGGGP 40
>02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108
Length = 139
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 710 PPPPXXPXKXSPPXXGXGKPPXG 778
PPPP P + +PP G G P G
Sbjct: 38 PPPPFFPPQWAPPVAGGGGPFAG 60
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 26.2 bits (55), Expect(2) = 6.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 707 APPPPXXPXKXSPP 748
+PPPP P K SPP
Sbjct: 79 SPPPPQKPDKVSPP 92
Score = 21.0 bits (42), Expect(2) = 6.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 698 SPXAPPPP 721
SP APPPP
Sbjct: 41 SPPAPPPP 48
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 701 PXAPPPPXXPXKXSPPXXGXGKPP 772
P +PPPP P SPP PP
Sbjct: 19 PLSPPPPPPPIFYSPPDVSYFSPP 42
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 701 PXAPPPPXXPXKXSPPXXGXGKPPXG 778
P PPPP + PP G PP G
Sbjct: 92 PPPPPPPLPQHRLEPPPPHYGFPPRG 117
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 707 APPPPXXPXKXSPPXXGXGKPP 772
APPPP P PP G PP
Sbjct: 325 APPPPPPPKAAPPPPPPKGPPP 346
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 701 PXAPPPPXXPXKXSPPXXGXGKPP 772
P A PPP P PP G PP
Sbjct: 332 PKAAPPPPPPKGPPPPPPAKGPPP 355
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = +1
Query: 232 GXPPXGGG-KGXPXXKKXLGGWXXPPXKGXGKXGXXGKMGXXXASXG 369
G PP GGG G P GG P + G G G +G G
Sbjct: 170 GRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGG 216
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = -1
Query: 368 PXEAXXXPI-FPXXPFFPXPFXGGXXXPPKXFFXXGXPLPPP 246
P PI F P P F GG PP F P+ PP
Sbjct: 177 PMRPPQMPIPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPP 218
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -1
Query: 713 GGPLGXXPXPXPFSGFWAFXGPLGQRXFPGXXPDSG 606
G P G P F G +A GP+ FPG P G
Sbjct: 510 GVPRGFPPFGPRFPGDFARGGPMPGMVFPGRPPQPG 545
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 701 PXAPPPPXXPXKXSPPXXGXGKPP 772
P APPPP P PP G KPP
Sbjct: 1928 PHAPPPPPPP----PPVEGKPKPP 1947
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 692 GXSPXAPPPPXXPXKXSPPXXGXGKPP 772
G SP PPPP P SPP PP
Sbjct: 198 GSSPVTPPPPPRP-NPSPPATRTTPPP 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,342
Number of Sequences: 37544
Number of extensions: 329027
Number of successful extensions: 1960
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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