Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_O08
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    30   0.51 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    29   1.2  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.6  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    27   4.7  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   6.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   6.2  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   8.2  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 559  PSLRRGRCPTPSRERERCPSHRPVRSQGDQG 651
            PS +  +  TPSRE+ R  +  PV+S+ D G
Sbjct: 1260 PSSKDTKIETPSREQSRSQTASPVKSEKDDG 1290


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 628 PVCAMGTFLSPLTASGTFLGAVMVSTP-SDDSRDSTVSGAAP 506
           P  +   FL+P+T SGTF  +   + P S   R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 260 LLNREYYRPWRHLAAAARDVGSSIKVDKDKFQV 358
           LLN  Y + W+ L++  + +  S   DKD  Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 514 RLRLWNRDCHQTGY---SPSLRRGRCPTPSRER-ERCPSHRPVRSQGDQGPE 657
           R+ LW + C+  GY   +P  ++   P+P++E     P    + S  D+  E
Sbjct: 122 RIHLWRQFCNVVGYDMPTPGEQKEAPPSPAQEAIPESPVEEAIASDSDEEEE 173


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 290 RHLAAAARDVGSSIKVDKDKFQVNLDVQHFAPEEI 394
           +H+     +V   ++VDK+K  ++L  +  +PE++
Sbjct: 61  KHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDV 95


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 610 TFLSPLTASGTFLGAVMVSTPSDDS-RDSTVSGAAP 506
           +F+S +TA  T  GAV+V  P+  +  ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 507 GAAPETVESRLSSDGVLTITAPRKVPD 587
           G  P T+ES ++ D  L I   RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,969
Number of Sequences: 5004
Number of extensions: 47511
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)